RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ANKRD18BA2A2Z9 1011 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 MOXD2PA6NHM9 499 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 PEX10O60683 326 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 FCGRTP55899 365 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 PPATQ06203 517 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 TCP10Q12799 353 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 CHAF1AQ13111 956 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-209ENST00000469511 PPP2R2DQ66LE6 453 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 APOBEC3HQ6NTF7 200 aaKnown RBP6.75□□□□□ -1.33
PTPN4-209ENST00000469511 ZFPM1Q8IX07 1006 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 TSR2Q969E8 191 aaKnown RBP6.75□□□□□ -1.33
PTPN4-209ENST00000469511 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.75□□□□□ -1.33
PTPN4-209ENST00000469511 ZNF112Q9UJU3 913 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 CHMP3Q9Y3E7 222 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 FRMPD3Q5JV73 1810 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 PFASO15067 1338 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 RPTORQ8N122 1335 aa6.75□□□□□ -1.33
PTPN4-209ENST00000469511 DOCK2Q92608 1830 aa6.74□□□□□ -1.33
PTPN4-209ENST00000469511 HOXA2O43364 376 aa6.74□□□□□ -1.33
PTPN4-209ENST00000469511 WDHD1O75717 1129 aaPredicted RBP6.74□□□□□ -1.33
PTPN4-209ENST00000469511 DDX58O95786 925 aaKnown RBP6.74□□□□□ -1.33
PTPN4-209ENST00000469511 HIBADHP31937 336 aaKnown RBP6.74□□□□□ -1.33
PTPN4-209ENST00000469511 TNNI2P48788 182 aa6.74□□□□□ -1.33
PTPN4-209ENST00000469511 NFIAQ12857 509 aa6.74□□□□□ -1.33
PTPN4-209ENST00000469511 CCDC30Q5VVM6 783 aa6.74□□□□□ -1.33
PTPN4-209ENST00000469511 LMBR1LQ6UX01 489 aa6.74□□□□□ -1.33
PTPN4-209ENST00000469511 NECAB2Q7Z6G3 386 aa6.74□□□□□ -1.33
PTPN4-209ENST00000469511 UBE2OQ9C0C9 1292 aaKnown RBP6.74□□□□□ -1.33
PTPN4-209ENST00000469511 COL2A1P02458 1487 aaPredicted RBP6.73□□□□□ -1.33
PTPN4-209ENST00000469511 CACNA1FO60840 1977 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 F6X3S4 739 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 APAF1O14727 1248 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 TNPO2O14787 897 aaKnown RBP6.73□□□□□ -1.33
PTPN4-209ENST00000469511 NEXNQ0ZGT2 675 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 IFIT5Q13325 482 aaKnown RBP6.73□□□□□ -1.33
PTPN4-209ENST00000469511 LDHAL6AQ6ZMR3 332 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 ZNF341Q9BYN7 854 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 IFT57Q9NWB7 429 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 MYH2Q9UKX2 1941 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 LTBP2Q14767 1821 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 TCF20Q9UGU0 1960 aaKnown RBP6.73□□□□□ -1.33
PTPN4-209ENST00000469511 DOCK1Q14185 1865 aa6.73□□□□□ -1.33
PTPN4-209ENST00000469511 EYSQ5T1H1 3165 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 ATAD5Q96QE3 1844 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 PHF20L1A8MW92 1017 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 LILRB3O75022 631 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 NDUFV2P19404 249 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 RFC5P40937 340 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 GNAI1P63096 354 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 IRF5Q13568 498 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 LRRC26Q2I0M4 334 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 TREML2Q5T2D2 321 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 GADL1Q6ZQY3 521 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 SH3BP5LQ7L8J4 393 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 FBXO33Q7Z6M2 555 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 FAM83AQ86UY5 434 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 ANKRD13CQ8N6S4 541 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 BANK1Q8NDB2 785 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 MYLIPQ8WY64 445 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 ZDHHC15Q96MV8 337 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 PARK7Q99497 189 aaKnown RBP6.72□□□□□ -1.33
PTPN4-209ENST00000469511 CDX2Q99626 313 aaPredicted RBP6.72□□□□□ -1.33
PTPN4-209ENST00000469511 ZMYND15Q9H091 742 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 C11orf49Q9H6J7 331 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 CNNM1Q9NRU3 951 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 GJD2Q9UKL4 321 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 ZHX2Q9Y6X8 837 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 NCOR1O75376 2440 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 MAST2Q6P0Q8 1798 aa6.72□□□□□ -1.33
PTPN4-209ENST00000469511 ATRNL1Q5VV63 1379 aa6.71□□□□□ -1.33
PTPN4-209ENST00000469511 PRUNE2Q8WUY3 3088 aa6.71□□□□□ -1.33
PTPN4-209ENST00000469511 A0A0G2JLL6 359 aaPredicted RBP6.71□□□□□ -1.34
PTPN4-209ENST00000469511 CFHP08603 1231 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 UBE4AQ14139 1066 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 MCM6Q14566 821 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 TMEM259Q4ZIN3 620 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 LRRC24Q50LG9 513 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 NOL9Q5SY16 702 aaKnown RBP6.71□□□□□ -1.34
PTPN4-209ENST00000469511 DCAF15Q66K64 600 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 CDC42EP5Q6NZY7 148 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 PRRT2Q7Z6L0 340 aaPredicted RBP6.71□□□□□ -1.34
PTPN4-209ENST00000469511 FAM151AQ8WW52 585 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 DNAAF4Q8WXU2 420 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 TRIB2Q92519 343 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 TEKT1Q969V4 418 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 KAZALD1Q96I82 304 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 TTYH1Q9H313 450 aaPredicted RBP6.71□□□□□ -1.34
PTPN4-209ENST00000469511 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.71□□□□□ -1.34
PTPN4-209ENST00000469511 OGDHLQ9ULD0 1010 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 AFG3L2Q9Y4W6 797 aa6.71□□□□□ -1.34
PTPN4-209ENST00000469511 RLFQ13129 1914 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 CXCL11O14625 94 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 FDX1P10109 184 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 COL6A1P12109 1028 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 PTPRAP18433 802 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 HDLBPQ00341 1268 aaKnown RBP6.7□□□□□ -1.34
PTPN4-209ENST00000469511 C9orf50Q5SZB4 431 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 BEND3Q5T5X7 828 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 FAM109BQ6ICB4 259 aaPredicted RBP6.7□□□□□ -1.34
PTPN4-209ENST00000469511 USP38Q8NB14 1042 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms