RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SLAIN1Q8ND83 568 aa20.17■□□□□ 0.82
CCDC28B-204ENST00000469003 TNPO2O14787 897 aaKnown RBP20.16■□□□□ 0.82
CCDC28B-204ENST00000469003 GCLCP48506 637 aaPredicted RBP20.16■□□□□ 0.82
CCDC28B-204ENST00000469003 BACE1P56817 501 aa20.16■□□□□ 0.82
CCDC28B-204ENST00000469003 UBXN2AP68543 259 aa20.16■□□□□ 0.82
CCDC28B-204ENST00000469003 JAG1P78504 1218 aa20.16■□□□□ 0.82
CCDC28B-204ENST00000469003 TTF1Q15361 905 aaPredicted RBP20.16■□□□□ 0.82
CCDC28B-204ENST00000469003 RAB11FIP3O75154 756 aa20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 GDF11O95390 407 aa20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 FLT3LGP49771 235 aa20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 MTMR2Q13614 643 aa20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 ASCC2Q9H1I8 757 aaPredicted RBP20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 BIN2Q9UBW5 565 aaPredicted RBP20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 ZBTB21Q9ULJ3 1066 aa20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 COLQQ9Y215 455 aaPredicted RBP20.15■□□□□ 0.82
CCDC28B-204ENST00000469003 C19orf81C9J6K1 198 aa20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 APBB1O00213 710 aa20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 ADCY3O60266 1144 aa20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 IFIT2P09913 472 aaKnown RBP20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 CCL5P13501 91 aa20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 IRF5Q13568 498 aa20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 SHROOM1Q2M3G4 852 aaPredicted RBP20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 NKX2-3Q8TAU0 364 aa20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 COA7Q96BR5 231 aa20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 RIOK1Q9BRS2 568 aaKnown RBP20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 TMOD4Q9NZQ9 345 aa20.14■□□□□ 0.81
CCDC28B-204ENST00000469003 USP17L10C9JJH3 530 aa20.13■□□□□ 0.81
CCDC28B-204ENST00000469003 PXYLP1Q8TE99 480 aa20.13■□□□□ 0.81
CCDC28B-204ENST00000469003 SHISA4Q96DD7 197 aa20.13■□□□□ 0.81
CCDC28B-204ENST00000469003 EHD4Q9H223 541 aa20.13■□□□□ 0.81
CCDC28B-204ENST00000469003 SERPINB13Q9UIV8 391 aa20.13■□□□□ 0.81
CCDC28B-204ENST00000469003 DOCK3Q8IZD9 2030 aa20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 GJB1P08034 283 aa20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 PDE6AP16499 860 aa20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 HOXA7P31268 230 aaPredicted RBP20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 GJA8P48165 433 aa20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 SLC9C2Q5TAH2 1124 aa20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 TATDN1Q6P1N9 297 aa20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 TTC6Q86TZ1 520 aa20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 RNF208Q9H0X6 261 aa20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 DDX60LQ5H9U9 1706 aaKnown RBP20.12■□□□□ 0.81
CCDC28B-204ENST00000469003 MAGEB6P1A0A0J9YX57 407 aa20.11■□□□□ 0.81
CCDC28B-204ENST00000469003 IRX3P78415 501 aaPredicted RBP20.11■□□□□ 0.81
CCDC28B-204ENST00000469003 PDE3AQ14432 1141 aa20.11■□□□□ 0.81
CCDC28B-204ENST00000469003 DNAJC2Q99543 621 aaKnown RBP20.11■□□□□ 0.81
CCDC28B-204ENST00000469003 MORF4L1Q9UBU8 362 aa20.11■□□□□ 0.81
CCDC28B-204ENST00000469003 NAV1Q8NEY1 1877 aa20.11■□□□□ 0.81
CCDC28B-204ENST00000469003 GOLIM4O00461 696 aa20.1■□□□□ 0.81
CCDC28B-204ENST00000469003 GH2P01242 217 aa20.1■□□□□ 0.81
CCDC28B-204ENST00000469003 ELNP15502 786 aa20.1■□□□□ 0.81
CCDC28B-204ENST00000469003 UNC93B1Q9H1C4 597 aa20.1■□□□□ 0.81
CCDC28B-204ENST00000469003 ZNF532Q9HCE3 1301 aa20.09■□□□□ 0.81
CCDC28B-204ENST00000469003 INHAP05111 366 aa20.09■□□□□ 0.81
CCDC28B-204ENST00000469003 USP17L2Q6R6M4 530 aa20.09■□□□□ 0.81
CCDC28B-204ENST00000469003 P2RX7Q99572 595 aaKnown RBP20.09■□□□□ 0.81
CCDC28B-204ENST00000469003 CRNKL1Q9BZJ0 848 aaKnown RBP20.09■□□□□ 0.81
CCDC28B-204ENST00000469003 TCRBV5S4A2TA0A5A2 114 aa20.08■□□□□ 0.81
CCDC28B-204ENST00000469003 HERVK_113P62684 666 aa20.08■□□□□ 0.81
CCDC28B-204ENST00000469003 CERKLQ49MI3 558 aaPredicted RBP20.08■□□□□ 0.81
CCDC28B-204ENST00000469003 C20orf194Q5TEA3 1177 aa20.08■□□□□ 0.81
CCDC28B-204ENST00000469003 BCL11AQ9H165 835 aa20.08■□□□□ 0.81
CCDC28B-204ENST00000469003 EMILIN3Q9NT22 766 aa20.08■□□□□ 0.81
CCDC28B-204ENST00000469003 TAOK2Q9UL54 1235 aa20.08■□□□□ 0.81
CCDC28B-204ENST00000469003 H0YGN5 161 aa20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 POLR3DP05423 398 aaPredicted RBP20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 ATP5JP18859 108 aa20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 PLCD1P51178 756 aa20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 U2AF1L4Q8WU68 220 aaKnown RBP20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 EDC3Q96F86 508 aaKnown RBP20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 C12orf42Q96LP6 360 aa20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 PAG1Q9NWQ8 432 aa20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 GJD2Q9UKL4 321 aa20.07■□□□□ 0.8
CCDC28B-204ENST00000469003 SGPL1O95470 568 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 CAPN2P17655 700 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 SHMT1P34896 483 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 ABCB5Q2M3G0 1257 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 UBE2Q1Q7Z7E8 422 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 GTF3C2Q8WUA4 911 aaPredicted RBP20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 BOLA2Q9H3K6 86 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 CABP5Q9NP86 173 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 PLXNB2O15031 1838 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 SZT2Q5T011 3432 aa20.06■□□□□ 0.8
CCDC28B-204ENST00000469003 USP14P54578 494 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 GABPAQ06546 454 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 RAB3GAP1Q15042 981 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 LCORLQ8N3X6 602 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 GPRC5AQ8NFJ5 357 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 FEZ1Q99689 392 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 HAUS7Q99871 368 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 LRRCC1Q9C099 1032 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 TXNRD2Q9NNW7 524 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 MCM9Q9NXL9 1143 aa20.05■□□□□ 0.8
CCDC28B-204ENST00000469003 SDR42E1Q8WUS8 393 aa20.04■□□□□ 0.8
CCDC28B-204ENST00000469003 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC28B-204ENST00000469003 KIAA1683Q9H0B3 1180 aa20.04■□□□□ 0.8
CCDC28B-204ENST00000469003 DCP1AQ9NPI6 582 aaPredicted RBP20.04■□□□□ 0.8
CCDC28B-204ENST00000469003 PAK6Q9NQU5 681 aaPredicted RBP20.04■□□□□ 0.8
CCDC28B-204ENST00000469003 RBPJLQ9UBG7 517 aa20.04■□□□□ 0.8
CCDC28B-204ENST00000469003 MYH7P12883 1935 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms