RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 BACE1P56817 501 aa23.09■■□□□ 1.29
COL7A1-207ENST00000467985 TMEM106CQ9BVX2 250 aa23.09■■□□□ 1.29
COL7A1-207ENST00000467985 ZBTB21Q9ULJ3 1066 aa23.09■■□□□ 1.29
COL7A1-207ENST00000467985 C19orf81C9J6K1 198 aa23.08■■□□□ 1.29
COL7A1-207ENST00000467985 OSBPP22059 807 aa23.08■■□□□ 1.29
COL7A1-207ENST00000467985 CTGFP29279 349 aa23.08■■□□□ 1.29
COL7A1-207ENST00000467985 SLC4A8Q2Y0W8 1093 aa23.08■■□□□ 1.29
COL7A1-207ENST00000467985 TATDN1Q6P1N9 297 aa23.08■■□□□ 1.29
COL7A1-207ENST00000467985 TMOD4Q9NZQ9 345 aa23.08■■□□□ 1.29
COL7A1-207ENST00000467985 KIAA0100Q14667 2235 aaKnown RBP23.08■■□□□ 1.28
COL7A1-207ENST00000467985 MKI67P46013 3256 aaKnown RBP23.07■■□□□ 1.28
COL7A1-207ENST00000467985 USP17L10C9JJH3 530 aa23.07■■□□□ 1.28
COL7A1-207ENST00000467985 GDF11O95390 407 aa23.07■■□□□ 1.28
COL7A1-207ENST00000467985 GCLCP48506 637 aaPredicted RBP23.07■■□□□ 1.28
COL7A1-207ENST00000467985 RAET1EQ8TD07 263 aa23.07■■□□□ 1.28
COL7A1-207ENST00000467985 EDC3Q96F86 508 aaKnown RBP23.07■■□□□ 1.28
COL7A1-207ENST00000467985 GPATCH3Q96I76 525 aa23.07■■□□□ 1.28
COL7A1-207ENST00000467985 POLR3DP05423 398 aaPredicted RBP23.06■■□□□ 1.28
COL7A1-207ENST00000467985 RRP1P56182 461 aaKnown RBP23.06■■□□□ 1.28
COL7A1-207ENST00000467985 JAG1P78504 1218 aa23.06■■□□□ 1.28
COL7A1-207ENST00000467985 MTMR2Q13614 643 aa23.06■■□□□ 1.28
COL7A1-207ENST00000467985 ZSCAN25Q6NSZ9 544 aa23.06■■□□□ 1.28
COL7A1-207ENST00000467985 ECHDC1Q9NTX5 307 aa23.06■■□□□ 1.28
COL7A1-207ENST00000467985 TAOK2Q9UL54 1235 aa23.06■■□□□ 1.28
COL7A1-207ENST00000467985 NAV1Q8NEY1 1877 aa23.06■■□□□ 1.28
COL7A1-207ENST00000467985 MYPNQ86TC9 1320 aa23.06■■□□□ 1.28
COL7A1-207ENST00000467985 DDX60LQ5H9U9 1706 aaKnown RBP23.05■■□□□ 1.28
COL7A1-207ENST00000467985 MGAMO43451 1857 aa23.05■■□□□ 1.28
COL7A1-207ENST00000467985 SMARCA5O60264 1052 aaPredicted RBP23.05■■□□□ 1.28
COL7A1-207ENST00000467985 ECM2O94769 699 aaPredicted RBP23.05■■□□□ 1.28
COL7A1-207ENST00000467985 ADD2P35612 726 aa23.05■■□□□ 1.28
COL7A1-207ENST00000467985 FAM110CQ1W6H9 321 aa23.05■■□□□ 1.28
COL7A1-207ENST00000467985 MCM9Q9NXL9 1143 aa23.05■■□□□ 1.28
COL7A1-207ENST00000467985 POTEFA5A3E0 1075 aa23.04■■□□□ 1.28
COL7A1-207ENST00000467985 GH2P01242 217 aa23.04■■□□□ 1.28
COL7A1-207ENST00000467985 UBE3CQ15386 1083 aa23.04■■□□□ 1.28
COL7A1-207ENST00000467985 CERKLQ49MI3 558 aaPredicted RBP23.04■■□□□ 1.28
COL7A1-207ENST00000467985 SH3TC2Q8TF17 1288 aa23.04■■□□□ 1.28
COL7A1-207ENST00000467985 ASCC2Q9H1I8 757 aaPredicted RBP23.04■■□□□ 1.28
COL7A1-207ENST00000467985 HOXA7P31268 230 aaPredicted RBP23.03■■□□□ 1.28
COL7A1-207ENST00000467985 PLCD1P51178 756 aa23.03■■□□□ 1.28
COL7A1-207ENST00000467985 LCORLQ8N3X6 602 aa23.03■■□□□ 1.28
COL7A1-207ENST00000467985 ANKRD13CQ8N6S4 541 aa23.03■■□□□ 1.28
COL7A1-207ENST00000467985 CABP5Q9NP86 173 aa23.03■■□□□ 1.28
COL7A1-207ENST00000467985 DCP1AQ9NPI6 582 aaPredicted RBP23.03■■□□□ 1.28
COL7A1-207ENST00000467985 ATP8A2Q9NTI2 1148 aa23.03■■□□□ 1.28
COL7A1-207ENST00000467985 MYH7P12883 1935 aa23.02■■□□□ 1.28
COL7A1-207ENST00000467985 GRK4P32298 578 aa23.02■■□□□ 1.28
COL7A1-207ENST00000467985 IRX3P78415 501 aaPredicted RBP23.02■■□□□ 1.28
COL7A1-207ENST00000467985 PRKCZQ05513 592 aa23.02■■□□□ 1.28
COL7A1-207ENST00000467985 ABCB5Q2M3G0 1257 aa23.02■■□□□ 1.28
COL7A1-207ENST00000467985 SHROOM1Q2M3G4 852 aaPredicted RBP23.02■■□□□ 1.28
COL7A1-207ENST00000467985 USP17L2Q6R6M4 530 aa23.02■■□□□ 1.28
COL7A1-207ENST00000467985 ARMT1Q9H993 441 aa23.02■■□□□ 1.28
COL7A1-207ENST00000467985 TNPO2O14787 897 aaKnown RBP23.01■■□□□ 1.27
COL7A1-207ENST00000467985 MBD4O95243 580 aa23.01■■□□□ 1.27
COL7A1-207ENST00000467985 SDR42E1Q8WUS8 393 aa23.01■■□□□ 1.27
COL7A1-207ENST00000467985 COA7Q96BR5 231 aa23.01■■□□□ 1.27
COL7A1-207ENST00000467985 DDRGK1Q96HY6 314 aa23.01■■□□□ 1.27
COL7A1-207ENST00000467985 SHMT1P34896 483 aa23■■□□□ 1.27
COL7A1-207ENST00000467985 USP14P54578 494 aa23■■□□□ 1.27
COL7A1-207ENST00000467985 GABPAQ06546 454 aa23■■□□□ 1.27
COL7A1-207ENST00000467985 RAB3GAP1Q15042 981 aa23■■□□□ 1.27
COL7A1-207ENST00000467985 AMOTL1Q8IY63 956 aa23■■□□□ 1.27
COL7A1-207ENST00000467985 SLAIN1Q8ND83 568 aa23■■□□□ 1.27
COL7A1-207ENST00000467985 PCDHB15Q9Y5E8 787 aa23■■□□□ 1.27
COL7A1-207ENST00000467985 GTF3C2Q8WUA4 911 aaPredicted RBP22.99■■□□□ 1.27
COL7A1-207ENST00000467985 FEZ1Q99689 392 aa22.99■■□□□ 1.27
COL7A1-207ENST00000467985 MORF4L1Q9UBU8 362 aa22.99■■□□□ 1.27
COL7A1-207ENST00000467985 SWAP70Q9UH65 585 aa22.99■■□□□ 1.27
COL7A1-207ENST00000467985 EN2P19622 333 aaPredicted RBP22.98■■□□□ 1.27
COL7A1-207ENST00000467985 UBXN2AP68543 259 aa22.98■■□□□ 1.27
COL7A1-207ENST00000467985 IRF5Q13568 498 aa22.98■■□□□ 1.27
COL7A1-207ENST00000467985 C12orf42Q96LP6 360 aa22.98■■□□□ 1.27
COL7A1-207ENST00000467985 KIAA1683Q9H0B3 1180 aa22.98■■□□□ 1.27
COL7A1-207ENST00000467985 BIN2Q9UBW5 565 aaPredicted RBP22.98■■□□□ 1.27
COL7A1-207ENST00000467985 GABRQQ9UN88 632 aa22.98■■□□□ 1.27
COL7A1-207ENST00000467985 FLT3LGP49771 235 aa22.97■■□□□ 1.27
COL7A1-207ENST00000467985 HERVK_113P62684 666 aa22.97■■□□□ 1.27
COL7A1-207ENST00000467985 KBTBD3Q8NAB2 608 aa22.97■■□□□ 1.27
COL7A1-207ENST00000467985 PXYLP1Q8TE99 480 aa22.97■■□□□ 1.27
COL7A1-207ENST00000467985 P2RX7Q99572 595 aaKnown RBP22.97■■□□□ 1.27
COL7A1-207ENST00000467985 EMILIN3Q9NT22 766 aa22.97■■□□□ 1.27
COL7A1-207ENST00000467985 TTC41PQ6P2S7 1318 aa22.97■■□□□ 1.27
COL7A1-207ENST00000467985 ADCY3O60266 1144 aa22.96■■□□□ 1.27
COL7A1-207ENST00000467985 MYCP01106 439 aaPredicted RBP22.96■■□□□ 1.27
COL7A1-207ENST00000467985 LRRFIP1Q32MZ4 808 aaKnown RBP22.96■■□□□ 1.27
COL7A1-207ENST00000467985 SLFNL1Q499Z3 407 aa22.96■■□□□ 1.27
COL7A1-207ENST00000467985 ERC2O15083 957 aa22.95■■□□□ 1.26
COL7A1-207ENST00000467985 PRKAB2O43741 272 aa22.95■■□□□ 1.26
COL7A1-207ENST00000467985 ZFYP08048 801 aaPredicted RBP22.95■■□□□ 1.26
COL7A1-207ENST00000467985 PRPF38BQ5VTL8 546 aaKnown RBP22.95■■□□□ 1.26
COL7A1-207ENST00000467985 GPRC5AQ8NFJ5 357 aa22.95■■□□□ 1.26
COL7A1-207ENST00000467985 NKX2-3Q8TAU0 364 aa22.95■■□□□ 1.26
COL7A1-207ENST00000467985 SLC4A4Q9Y6R1 1079 aa22.95■■□□□ 1.26
COL7A1-207ENST00000467985 USP17L15C9J2P7 530 aa22.94■■□□□ 1.26
COL7A1-207ENST00000467985 USP17L13C9JLJ4 530 aa22.94■■□□□ 1.26
COL7A1-207ENST00000467985 USP17L11C9JVI0 530 aa22.94■■□□□ 1.26
COL7A1-207ENST00000467985 USP17L18D6R9N7 530 aa22.94■■□□□ 1.26
COL7A1-207ENST00000467985 USP17L22D6RA61 530 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 509.6 ms