RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 SWAP70Q9UH65 585 aa24.32■■□□□ 1.48
SKA3-205ENST00000465471 GTF2A2P52657 109 aa24.31■■□□□ 1.48
SKA3-205ENST00000465471 SHROOM1Q2M3G4 852 aaPredicted RBP24.31■■□□□ 1.48
SKA3-205ENST00000465471 C16orf86Q6ZW13 317 aa24.31■■□□□ 1.48
SKA3-205ENST00000465471 DYNLL2Q96FJ2 89 aa24.31■■□□□ 1.48
SKA3-205ENST00000465471 NACAP1Q9BZK3 213 aa24.31■■□□□ 1.48
SKA3-205ENST00000465471 AFG3L2Q9Y4W6 797 aa24.31■■□□□ 1.48
SKA3-205ENST00000465471 GDF11O95390 407 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 APPP05067 770 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 ASNSP08243 561 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 TDO2P48775 406 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 ALX1Q15699 326 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 BMP2KLQ5H9B9 411 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 CWC27Q6UX04 472 aaKnown RBP24.3■■□□□ 1.48
SKA3-205ENST00000465471 SLC44A5Q8NCS7 719 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 SAGE1Q9NXZ1 904 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 ZBTB21Q9ULJ3 1066 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 ZHX2Q9Y6X8 837 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 ZMYM6O95789 1325 aa24.3■■□□□ 1.48
SKA3-205ENST00000465471 CA12O43570 354 aa24.29■■□□□ 1.48
SKA3-205ENST00000465471 SNAPC2Q13487 334 aa24.29■■□□□ 1.48
SKA3-205ENST00000465471 BRI3BPQ8WY22 251 aa24.29■■□□□ 1.48
SKA3-205ENST00000465471 PTPN18Q99952 460 aa24.29■■□□□ 1.48
SKA3-205ENST00000465471 TBC1D2Q9BYX2 928 aa24.29■■□□□ 1.48
SKA3-205ENST00000465471 IGF2BP3O00425 579 aaKnown RBP eCLIP24.28■■□□□ 1.48
SKA3-205ENST00000465471 CXCL11O14625 94 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 HSPD1P10809 573 aaKnown RBP24.28■■□□□ 1.48
SKA3-205ENST00000465471 CHMLP26374 656 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 CDK8P49336 464 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 MFAP1P55081 439 aaKnown RBP24.28■■□□□ 1.48
SKA3-205ENST00000465471 MOGSQ13724 837 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 CERKLQ49MI3 558 aaPredicted RBP24.28■■□□□ 1.48
SKA3-205ENST00000465471 CCDC84Q86UT8 332 aaPredicted RBP24.28■■□□□ 1.48
SKA3-205ENST00000465471 IFNL1Q8IU54 200 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 NAPBQ9H115 298 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 IL25Q9H293 177 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 RNF186Q9NXI6 227 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 LOC285556D6RIA3 1793 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 RAD50Q92878 1312 aa24.28■■□□□ 1.48
SKA3-205ENST00000465471 GREB1LQ9C091 1923 aaPredicted RBP24.27■■□□□ 1.48
SKA3-205ENST00000465471 CCL15-CCL14A0A0B4J2E2 113 aa24.27■■□□□ 1.48
SKA3-205ENST00000465471 USP17L5A8MUK1 530 aa24.27■■□□□ 1.48
SKA3-205ENST00000465471 FOXN1O15353 648 aa24.27■■□□□ 1.48
SKA3-205ENST00000465471 CETPP11597 493 aa24.27■■□□□ 1.48
SKA3-205ENST00000465471 CCL15Q16663 113 aa24.27■■□□□ 1.48
SKA3-205ENST00000465471 A0A0G2JLL6 359 aaPredicted RBP24.26■■□□□ 1.47
SKA3-205ENST00000465471 GH2P01242 217 aa24.26■■□□□ 1.47
SKA3-205ENST00000465471 ABCB5Q2M3G0 1257 aa24.26■■□□□ 1.47
SKA3-205ENST00000465471 PRRT2Q7Z6L0 340 aaPredicted RBP24.26■■□□□ 1.47
SKA3-205ENST00000465471 BEGAINQ9BUH8 593 aa24.26■■□□□ 1.47
SKA3-205ENST00000465471 WDR18Q9BV38 432 aa24.26■■□□□ 1.47
SKA3-205ENST00000465471 CFHR5Q9BXR6 569 aa24.26■■□□□ 1.47
SKA3-205ENST00000465471 LAMA4Q16363 1823 aa24.26■■□□□ 1.47
SKA3-205ENST00000465471 MINDY4BA8MYZ0 360 aa24.25■■□□□ 1.47
SKA3-205ENST00000465471 GUCY1A2P33402 732 aa24.25■■□□□ 1.47
SKA3-205ENST00000465471 ZNF280CQ8ND82 737 aa24.25■■□□□ 1.47
SKA3-205ENST00000465471 FGAP02671 866 aa24.24■■□□□ 1.47
SKA3-205ENST00000465471 PPARAQ07869 468 aa24.24■■□□□ 1.47
SKA3-205ENST00000465471 AS3MTQ9HBK9 375 aa24.24■■□□□ 1.47
SKA3-205ENST00000465471 ANAPC4Q9UJX5 808 aa24.24■■□□□ 1.47
SKA3-205ENST00000465471 ALDH1A1P00352 501 aa24.23■■□□□ 1.47
SKA3-205ENST00000465471 HSPA8P11142 646 aaKnown RBP24.23■■□□□ 1.47
SKA3-205ENST00000465471 CCDC17Q96LX7 622 aa24.23■■□□□ 1.47
SKA3-205ENST00000465471 ZCCHC17Q9NP64 241 aaKnown RBP24.23■■□□□ 1.47
SKA3-205ENST00000465471 TRIM75PA6NK02 468 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 TRPA1O75762 1119 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 AKR1B1P15121 316 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 RASA1P20936 1047 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 CTCFP49711 727 aaPredicted RBP24.22■■□□□ 1.47
SKA3-205ENST00000465471 SPP2Q13103 211 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 SH3D19Q5HYK7 790 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 FAM43AQ8N2R8 423 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 RUFY2Q8WXA3 655 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 DSCC1Q9BVC3 393 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 CABP5Q9NP86 173 aa24.22■■□□□ 1.47
SKA3-205ENST00000465471 BTBD19C9JJ37 291 aa24.21■■□□□ 1.47
SKA3-205ENST00000465471 SGSM2O43147 1006 aa24.21■■□□□ 1.47
SKA3-205ENST00000465471 TMEM179Q6ZVK1 233 aa24.21■■□□□ 1.47
SKA3-205ENST00000465471 ANKRD23Q86SG2 305 aa24.21■■□□□ 1.47
SKA3-205ENST00000465471 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.21■■□□□ 1.47
SKA3-205ENST00000465471 SEPT2Q15019 361 aa24.2■■□□□ 1.46
SKA3-205ENST00000465471 OTUD7BQ6GQQ9 843 aa24.2■■□□□ 1.46
SKA3-205ENST00000465471 GPAT2Q6NUI2 795 aa24.2■■□□□ 1.46
SKA3-205ENST00000465471 FGRP09769 529 aa24.19■■□□□ 1.46
SKA3-205ENST00000465471 BACE1P56817 501 aa24.19■■□□□ 1.46
SKA3-205ENST00000465471 RAB3GAP1Q15042 981 aa24.19■■□□□ 1.46
SKA3-205ENST00000465471 FASTKD5Q7L8L6 764 aaKnown RBP24.19■■□□□ 1.46
SKA3-205ENST00000465471 PROCA1Q8NCQ7 364 aaPredicted RBP24.19■■□□□ 1.46
SKA3-205ENST00000465471 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.19■■□□□ 1.46
SKA3-205ENST00000465471 ZNF287Q9HBT7 754 aa24.19■■□□□ 1.46
SKA3-205ENST00000465471 TSKSQ9UJT2 592 aa24.19■■□□□ 1.46
SKA3-205ENST00000465471 TACC3Q9Y6A5 838 aa24.19■■□□□ 1.46
SKA3-205ENST00000465471 PLIN4Q96Q06 1357 aa24.18■■□□□ 1.46
SKA3-205ENST00000465471 SLC3A2P08195 630 aaKnown RBP24.18■■□□□ 1.46
SKA3-205ENST00000465471 MTMR2Q13614 643 aa24.18■■□□□ 1.46
SKA3-205ENST00000465471 NBPF3Q9H094 633 aa24.18■■□□□ 1.46
SKA3-205ENST00000465471 MKNK2Q9HBH9 465 aa24.18■■□□□ 1.46
SKA3-205ENST00000465471 USP17L10C9JJH3 530 aa24.17■■□□□ 1.46
SKA3-205ENST00000465471 MPHOSPH10O00566 681 aaKnown RBP24.17■■□□□ 1.46
SKA3-205ENST00000465471 HMGCS2P54868 508 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms