RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 GLRX3O76003 335 aaKnown RBP21.4■■□□□ 1.02
COL7A1-205ENST00000465238 PRKCZQ05513 592 aa21.4■■□□□ 1.02
COL7A1-205ENST00000465238 SPP2Q13103 211 aa21.4■■□□□ 1.02
COL7A1-205ENST00000465238 EDC3Q96F86 508 aaKnown RBP21.4■■□□□ 1.02
COL7A1-205ENST00000465238 FOCADQ5VW36 1801 aa21.4■■□□□ 1.02
COL7A1-205ENST00000465238 LOC285556D6RIA3 1793 aa21.39■■□□□ 1.01
COL7A1-205ENST00000465238 SALL3Q9BXA9 1300 aa21.39■■□□□ 1.01
COL7A1-205ENST00000465238 USP17L5A8MUK1 530 aa21.39■■□□□ 1.01
COL7A1-205ENST00000465238 CYP7A1P22680 504 aa21.39■■□□□ 1.01
COL7A1-205ENST00000465238 MTFR1Q15390 333 aa21.39■■□□□ 1.01
COL7A1-205ENST00000465238 TMED8Q6PL24 325 aaPredicted RBP21.39■■□□□ 1.01
COL7A1-205ENST00000465238 STAP2Q9UGK3 403 aa21.39■■□□□ 1.01
COL7A1-205ENST00000465238 SIPA1L1O43166 1804 aa21.39■■□□□ 1.01
COL7A1-205ENST00000465238 CEP290O15078 2479 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 PDE1AP54750 535 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 UBXN2AP68543 259 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 PABPC4Q13310 644 aaKnown RBP eCLIP21.38■■□□□ 1.01
COL7A1-205ENST00000465238 TREML2Q5T2D2 321 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 ADGRA1Q86SQ6 560 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 MAGEB6Q8N7X4 407 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 SLAIN1Q8ND83 568 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 NKX2-3Q8TAU0 364 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 PI4K2BQ8TCG2 481 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 TGFBRAP1Q8WUH2 860 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 CCDC136Q96JN2 1154 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.38■■□□□ 1.01
COL7A1-205ENST00000465238 AS3MTQ9HBK9 375 aa21.38■■□□□ 1.01
COL7A1-205ENST00000465238 BIN2Q9UBW5 565 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-205ENST00000465238 FLT1P17948 1338 aa21.37■■□□□ 1.01
COL7A1-205ENST00000465238 RRP1BQ14684 758 aaKnown RBP21.37■■□□□ 1.01
COL7A1-205ENST00000465238 SLC9C2Q5TAH2 1124 aa21.37■■□□□ 1.01
COL7A1-205ENST00000465238 FOXP4Q8IVH2 680 aaPredicted RBP21.37■■□□□ 1.01
COL7A1-205ENST00000465238 MAPKAPK5Q8IW41 473 aa21.37■■□□□ 1.01
COL7A1-205ENST00000465238 GABRQQ9UN88 632 aa21.37■■□□□ 1.01
COL7A1-205ENST00000465238 TNPO2O14787 897 aaKnown RBP21.36■■□□□ 1.01
COL7A1-205ENST00000465238 ASNSP08243 561 aa21.36■■□□□ 1.01
COL7A1-205ENST00000465238 HMGCS2P54868 508 aa21.36■■□□□ 1.01
COL7A1-205ENST00000465238 FAM110CQ1W6H9 321 aa21.36■■□□□ 1.01
COL7A1-205ENST00000465238 SH3D19Q5HYK7 790 aa21.36■■□□□ 1.01
COL7A1-205ENST00000465238 ERICH6BQ5W0A0 696 aa21.36■■□□□ 1.01
COL7A1-205ENST00000465238 CENPQQ7L2Z9 268 aaPredicted RBP21.36■■□□□ 1.01
COL7A1-205ENST00000465238 METTL16Q86W50 562 aaKnown RBP21.36■■□□□ 1.01
COL7A1-205ENST00000465238 CERS3Q8IU89 383 aa21.36■■□□□ 1.01
COL7A1-205ENST00000465238 GJB1P08034 283 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 CCL5P13501 91 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 PDE6AP16499 860 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 GCLCP48506 637 aaPredicted RBP21.35■■□□□ 1.01
COL7A1-205ENST00000465238 FLT3LGP49771 235 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 ZSCAN25Q6NSZ9 544 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 PLEKHM2Q8IWE5 1019 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 CRACR2BQ8N4Y2 399 aaPredicted RBP21.35■■□□□ 1.01
COL7A1-205ENST00000465238 ANKRD13CQ8N6S4 541 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 SHISA4Q96DD7 197 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 WDR18Q9BV38 432 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 TRIM34Q9BYJ4 488 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 GINM1Q9NU53 330 aa21.35■■□□□ 1.01
COL7A1-205ENST00000465238 DOCK3Q8IZD9 2030 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 MYH7P12883 1935 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 ADCY3O60266 1144 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 GJA8P48165 433 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 IRF5Q13568 498 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 PXYLP1Q8TE99 480 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 COA7Q96BR5 231 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 RNF208Q9H0X6 261 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 PCDH10Q9P2E7 1040 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 PALD1Q9ULE6 856 aa21.34■■□□□ 1.01
COL7A1-205ENST00000465238 HLA-DOAP06340 250 aa21.33■■□□□ 1.01
COL7A1-205ENST00000465238 KBTBD3Q8NAB2 608 aa21.33■■□□□ 1.01
COL7A1-205ENST00000465238 DNAJC18Q9H819 358 aa21.33■■□□□ 1.01
COL7A1-205ENST00000465238 ZNF532Q9HCE3 1301 aa21.32■■□□□ 1
COL7A1-205ENST00000465238 MYH1P12882 1939 aa21.32■■□□□ 1
COL7A1-205ENST00000465238 BACE1P56817 501 aa21.32■■□□□ 1
COL7A1-205ENST00000465238 DYNLL1P63167 89 aaKnown RBP21.32■■□□□ 1
COL7A1-205ENST00000465238 LRRFIP1Q32MZ4 808 aaKnown RBP21.32■■□□□ 1
COL7A1-205ENST00000465238 ASCC2Q9H1I8 757 aaPredicted RBP21.32■■□□□ 1
COL7A1-205ENST00000465238 OSBPL3Q9H4L5 887 aa21.32■■□□□ 1
COL7A1-205ENST00000465238 ADD2P35612 726 aa21.31■■□□□ 1
COL7A1-205ENST00000465238 MTMR2Q13614 643 aa21.31■■□□□ 1
COL7A1-205ENST00000465238 HABP4Q5JVS0 413 aaKnown RBP21.31■■□□□ 1
COL7A1-205ENST00000465238 MIGA1Q8NAN2 632 aa21.31■■□□□ 1
COL7A1-205ENST00000465238 TMOD4Q9NZQ9 345 aa21.31■■□□□ 1
COL7A1-205ENST00000465238 SAP30BPQ9UHR5 308 aaKnown RBP21.31■■□□□ 1
COL7A1-205ENST00000465238 MAGEB6P1A0A0J9YX57 407 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 C19orf81C9J6K1 198 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 ELNP15502 786 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 PDE4AP27815 886 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 UBE3CQ15386 1083 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 FSD1Q9BTV5 496 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 UNC93B1Q9H1C4 597 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 PPP4R2Q9NY27 417 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 ZBTB21Q9ULJ3 1066 aa21.3■■□□□ 1
COL7A1-205ENST00000465238 TCRBV5S4A2TA0A5A2 114 aa21.29■■□□□ 1
COL7A1-205ENST00000465238 USP17L10C9JJH3 530 aa21.29■■□□□ 1
COL7A1-205ENST00000465238 GDF11O95390 407 aa21.29■■□□□ 1
COL7A1-205ENST00000465238 INHAP05111 366 aa21.29■■□□□ 1
COL7A1-205ENST00000465238 ZFYP08048 801 aaPredicted RBP21.29■■□□□ 1
COL7A1-205ENST00000465238 CAPN2P17655 700 aa21.29■■□□□ 1
COL7A1-205ENST00000465238 HOXA7P31268 230 aaPredicted RBP21.29■■□□□ 1
COL7A1-205ENST00000465238 USP5P45974 858 aa21.29■■□□□ 1
COL7A1-205ENST00000465238 IRX3P78415 501 aaPredicted RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms