RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 RABGGTAQ92696 567 aa21.2■□□□□ 0.98
CCDC88B-204ENST00000463837 ZC3H12CQ9C0D7 883 aaKnown RBP21.2■□□□□ 0.98
CCDC88B-204ENST00000463837 V9GY48 417 aaPredicted RBP21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 GOLGA8KD6RF30 607 aa21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 STX10O60499 249 aa21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 FAM71BQ8TC56 605 aa21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 CCDC160A6NGH7 325 aa21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 VIMP08670 466 aaKnown RBP21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 PLCB1Q9NQ66 1216 aa21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 SND1Q7KZF4 910 aaKnown RBP eCLIP21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 CSRNP2Q9H175 543 aa21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 GLT8D2Q9H1C3 349 aa21.19■□□□□ 0.98
CCDC88B-204ENST00000463837 TRIM58Q8NG06 486 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 ERVK-7P63135 1459 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 LETM2Q2VYF4 491 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 TAOK1Q7L7X3 1001 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 SYCE1Q8N0S2 351 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 IMPG2Q9BZV3 1241 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 OR8K1Q8NGG5 319 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 SIRT1Q96EB6 747 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 B4DLN1 442 aa21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 MRPL12P52815 198 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-204ENST00000463837 EEF2P13639 858 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 CABS1Q96KC9 395 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 CDCA7Q9BWT1 371 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 SERTAD1Q9UHV2 236 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 CEP83Q9Y592 693 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 PBRM1Q86U86 1689 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 CETN3O15182 167 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 PLCB3Q01970 1234 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 KRT25Q7Z3Z0 450 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 FRMD4BQ9Y2L6 1034 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 PARP3Q9Y6F1 533 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 AATKQ6ZMQ8 1374 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 MYOM2P54296 1465 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 CALUO43852 315 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 UBL4BQ8N7F7 174 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 MAP4K1Q92918 833 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 SYNCQ9H7C4 482 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 ADKP55263 362 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 SEC62Q99442 399 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 LZTS2Q9BRK4 669 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 HAUS4Q9H6D7 363 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 PHLPP2Q6ZVD8 1323 aa21.17■□□□□ 0.98
CCDC88B-204ENST00000463837 CD2BP2O95400 341 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 PPARDQ03181 441 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 EYA3Q99504 573 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 RTEL1Q9NZ71 1219 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 PCDHA7Q9UN72 937 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 TBX22Q9Y458 520 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 A0A0D9SFI3 127 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 ITGA6P23229 1130 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 ARMT1Q9H993 441 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 PPP1R13BQ96KQ4 1090 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 TFCP2L1Q9NZI6 479 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 TNFAIP3P21580 790 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 PRDM15P57071 1507 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 DCAF17Q5H9S7 520 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 HAUS3Q68CZ6 603 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 CERS3Q8IU89 383 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 JDP2Q8WYK2 163 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 PHKBQ93100 1093 aa21.16■□□□□ 0.98
CCDC88B-204ENST00000463837 IKBKBO14920 756 aa21.15■□□□□ 0.98
CCDC88B-204ENST00000463837 LMNTD2Q8IXW0 634 aa21.15■□□□□ 0.98
CCDC88B-204ENST00000463837 TRMT44Q8IYL2 757 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-204ENST00000463837 ADCY9O60503 1353 aa21.15■□□□□ 0.98
CCDC88B-204ENST00000463837 NOSTRINQ8IVI9 506 aa21.15■□□□□ 0.98
CCDC88B-204ENST00000463837 LDHBP07195 334 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-204ENST00000463837 ZMYM6O95789 1325 aa21.15■□□□□ 0.98
CCDC88B-204ENST00000463837 GDAP1L1Q96MZ0 367 aa21.15■□□□□ 0.98
CCDC88B-204ENST00000463837 IFIH1Q9BYX4 1025 aaKnown RBP21.14■□□□□ 0.98
CCDC88B-204ENST00000463837 SLC52A2Q9HAB3 445 aa21.14■□□□□ 0.98
CCDC88B-204ENST00000463837 NDUFB9Q9Y6M9 179 aa21.14■□□□□ 0.98
CCDC88B-204ENST00000463837 APBA1Q02410 837 aa21.14■□□□□ 0.98
CCDC88B-204ENST00000463837 PSMB7Q99436 277 aa21.14■□□□□ 0.98
CCDC88B-204ENST00000463837 MYO1AQ9UBC5 1043 aa21.14■□□□□ 0.98
CCDC88B-204ENST00000463837 NCKAP5LQ9HCH0 1330 aa21.14■□□□□ 0.97
CCDC88B-204ENST00000463837 GBP1P32455 592 aa21.14■□□□□ 0.97
CCDC88B-204ENST00000463837 MSANTD4Q8NCY6 345 aa21.14■□□□□ 0.97
CCDC88B-204ENST00000463837 LPIN2Q92539 896 aa21.14■□□□□ 0.97
CCDC88B-204ENST00000463837 KIFAP3Q92845 792 aa21.14■□□□□ 0.97
CCDC88B-204ENST00000463837 HAUS7Q99871 368 aa21.14■□□□□ 0.97
CCDC88B-204ENST00000463837 PDE8AO60658 829 aa21.14■□□□□ 0.97
CCDC88B-204ENST00000463837 RPS6KA1Q15418 735 aa21.14■□□□□ 0.97
CCDC88B-204ENST00000463837 PLEKHG3A1L390 1219 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 FLOT1O75955 427 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 PARP10Q53GL7 1025 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 NEURL1BA8MQ27 555 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 NONOQ15233 471 aaKnown RBP eCLIP21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 SFMBT2Q5VUG0 894 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 CCDC63Q8NA47 563 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 FYB2Q5VWT5 728 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 HYOU1Q9Y4L1 999 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 MBD5Q9P267 1494 aa21.13■□□□□ 0.97
CCDC88B-204ENST00000463837 BEND3Q5T5X7 828 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 SPATA1Q5VX52 437 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 STMN2Q93045 179 aa21.12■□□□□ 0.97
CCDC88B-204ENST00000463837 LGR6Q9HBX8 967 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms