RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 HHIPQ96QV1 700 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 ORAI2Q96SN7 254 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 BRINP2Q9C0B6 783 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 ACBD3Q9H3P7 528 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 PIF1Q9H611 641 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 TERF2IPQ9NYB0 399 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 TRIM33Q9UPN9 1127 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 KNSTRNQ9Y448 316 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 PPME1Q9Y570 386 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 OVOS2A0A0J9YW53 1432 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 OVOS2Q6IE36 1432 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 PXDNQ92626 1479 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 VIRMAQ69YN4 1812 aaKnown RBP6.13□□□□□ -1.43
CSMD3-205ENST00000462254 hCG_2014768A0A024R1R8 64 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 LDHBP07195 334 aaKnown RBP6.13□□□□□ -1.43
CSMD3-205ENST00000462254 ATF3P18847 181 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 KCNMA1Q12791 1236 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 DSC3Q14574 896 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 GDF6Q6KF10 455 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-205ENST00000462254 ILDR2Q71H61 639 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 DMRTC2Q8IXT2 367 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-205ENST00000462254 TTC9Q92623 222 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 PMEPA1Q969W9 287 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 DMRTB1Q96MA1 342 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 PSMD1Q99460 953 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 DUSP9Q99956 384 aaKnown RBP6.13□□□□□ -1.43
CSMD3-205ENST00000462254 RBSNQ9H1K0 784 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 ZSWIM4Q9H7M6 989 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-205ENST00000462254 CGNL1Q0VF96 1302 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 NSD2O96028 1365 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 IQSEC2Q5JU85 1478 aa6.13□□□□□ -1.43
CSMD3-205ENST00000462254 COL16A1Q07092 1604 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-205ENST00000462254 AHDC1Q5TGY3 1603 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-205ENST00000462254 FAM229AH3BQW9 127 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 NFKBIEO00221 500 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 EIF1AYO14602 144 aaKnown RBP6.12□□□□□ -1.43
CSMD3-205ENST00000462254 FYB1O15117 783 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 DNAJA1P31689 397 aaKnown RBP6.12□□□□□ -1.43
CSMD3-205ENST00000462254 BAG6P46379 1132 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 RASSF7Q02833 373 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 MED1Q15648 1581 aaPredicted RBP6.12□□□□□ -1.43
CSMD3-205ENST00000462254 CCDC184Q52MB2 194 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 CCDC181Q5TID7 509 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 PEAR1Q5VY43 1037 aaPredicted RBP6.12□□□□□ -1.43
CSMD3-205ENST00000462254 CEP135Q66GS9 1140 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 ZNF746Q6NUN9 644 aaPredicted RBP6.12□□□□□ -1.43
CSMD3-205ENST00000462254 TTC21BQ7Z4L5 1316 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.12□□□□□ -1.43
CSMD3-205ENST00000462254 ALKBH8Q96BT7 664 aaKnown RBP6.12□□□□□ -1.43
CSMD3-205ENST00000462254 FAM161BQ96MY7 647 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 POP1Q99575 1024 aaKnown RBP6.12□□□□□ -1.43
CSMD3-205ENST00000462254 ZKSCAN3Q9BRR0 538 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 PBX4Q9BYU1 374 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 LACRTQ9GZZ8 138 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 DZANK1Q9NVP4 752 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 VTI1BQ9UEU0 232 aa6.12□□□□□ -1.43
CSMD3-205ENST00000462254 DLG5Q8TDM6 1919 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 COL18A1P39060 1754 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 COL22A1Q8NFW1 1626 aaPredicted RBP6.11□□□□□ -1.43
CSMD3-205ENST00000462254 SLIT3O75094 1523 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 NFAT5O94916 1531 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 MYBBP1AQ9BQG0 1328 aaKnown RBP6.11□□□□□ -1.43
CSMD3-205ENST00000462254 IBSPP21815 317 aaPredicted RBP6.11□□□□□ -1.43
CSMD3-205ENST00000462254 PLCB3Q01970 1234 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 ARID5AQ03989 594 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 PSMD2Q13200 908 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 TRAPPC3LQ5T215 181 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 MSL1Q68DK7 614 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 BRINP3Q76B58 766 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 NME9Q86XW9 330 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 NGDNQ8NEJ9 315 aaKnown RBP6.11□□□□□ -1.43
CSMD3-205ENST00000462254 DDX17Q92841 729 aaKnown RBP6.11□□□□□ -1.43
CSMD3-205ENST00000462254 OSMRQ99650 979 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 OSBPL2Q9H1P3 480 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 SUGT1Q9Y2Z0 365 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 RIPOR2Q9Y4F9 1068 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 RGPD1P0DJD0 1748 aa6.11□□□□□ -1.43
CSMD3-205ENST00000462254 COL3A1P02461 1466 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-205ENST00000462254 BRD4O60885 1362 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-205ENST00000462254 USP31Q70CQ4 1352 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 TTC21AQ8NDW8 1320 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 RNF225M0QZC1 329 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-205ENST00000462254 CPNE3O75131 537 aaKnown RBP6.1□□□□□ -1.43
CSMD3-205ENST00000462254 CLSTN1O94985 981 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 EDN3P14138 238 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 TNNI2P48788 182 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 TCEAL1Q15170 157 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 RALBP1Q15311 655 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 GALNT12Q8IXK2 581 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 IL22RA1Q8N6P7 574 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 ZCRB1Q8TBF4 217 aaKnown RBP6.1□□□□□ -1.43
CSMD3-205ENST00000462254 DCAF5Q96JK2 942 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 CSRNP1Q96S65 589 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 SETDB2Q96T68 719 aa6.1□□□□□ -1.43
CSMD3-205ENST00000462254 TNS3Q68CZ2 1445 aa6.09□□□□□ -1.43
CSMD3-205ENST00000462254 SMG6Q86US8 1419 aaKnown RBP6.09□□□□□ -1.43
CSMD3-205ENST00000462254 A0A0A0MRY4 1105 aa6.09□□□□□ -1.43
CSMD3-205ENST00000462254 LOC102724159A0A0B4J2E5 919 aa6.09□□□□□ -1.43
CSMD3-205ENST00000462254 A0A1W2PP55 124 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms