RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 ZBTB21Q9ULJ3 1066 aa27.7■■■□□ 2.02
PTPN4-207ENST00000460162 BACE1P56817 501 aa27.69■■■□□ 2.02
PTPN4-207ENST00000460162 UBXN2AP68543 259 aa27.69■■■□□ 2.02
PTPN4-207ENST00000460162 MTFR1Q15390 333 aa27.69■■■□□ 2.02
PTPN4-207ENST00000460162 EHD4Q9H223 541 aa27.69■■■□□ 2.02
PTPN4-207ENST00000460162 GABRQQ9UN88 632 aa27.69■■■□□ 2.02
PTPN4-207ENST00000460162 RAB11FIP3O75154 756 aa27.68■■■□□ 2.02
PTPN4-207ENST00000460162 GDF11O95390 407 aa27.68■■■□□ 2.02
PTPN4-207ENST00000460162 IRF5Q13568 498 aa27.68■■■□□ 2.02
PTPN4-207ENST00000460162 ASCC2Q9H1I8 757 aaPredicted RBP27.68■■■□□ 2.02
PTPN4-207ENST00000460162 TMOD4Q9NZQ9 345 aa27.68■■■□□ 2.02
PTPN4-207ENST00000460162 APBB1O00213 710 aa27.67■■■□□ 2.02
PTPN4-207ENST00000460162 IFIT2P09913 472 aaKnown RBP27.67■■■□□ 2.02
PTPN4-207ENST00000460162 FLT3LGP49771 235 aa27.67■■■□□ 2.02
PTPN4-207ENST00000460162 JAG1P78504 1218 aa27.67■■■□□ 2.02
PTPN4-207ENST00000460162 NKX2-3Q8TAU0 364 aa27.67■■■□□ 2.02
PTPN4-207ENST00000460162 RIOK1Q9BRS2 568 aaKnown RBP27.67■■■□□ 2.02
PTPN4-207ENST00000460162 C19orf81C9J6K1 198 aa27.66■■■□□ 2.02
PTPN4-207ENST00000460162 COA7Q96BR5 231 aa27.66■■■□□ 2.02
PTPN4-207ENST00000460162 GCC1Q96CN9 775 aa27.66■■■□□ 2.02
PTPN4-207ENST00000460162 SHISA4Q96DD7 197 aa27.66■■■□□ 2.02
PTPN4-207ENST00000460162 BIN2Q9UBW5 565 aaPredicted RBP27.66■■■□□ 2.02
PTPN4-207ENST00000460162 SERPINB13Q9UIV8 391 aa27.66■■■□□ 2.02
PTPN4-207ENST00000460162 DOCK3Q8IZD9 2030 aa27.65■■■□□ 2.02
PTPN4-207ENST00000460162 ADCY3O60266 1144 aa27.65■■■□□ 2.02
PTPN4-207ENST00000460162 CCL5P13501 91 aa27.65■■■□□ 2.02
PTPN4-207ENST00000460162 PDE3AQ14432 1141 aa27.65■■■□□ 2.02
PTPN4-207ENST00000460162 SHROOM1Q2M3G4 852 aaPredicted RBP27.65■■■□□ 2.02
PTPN4-207ENST00000460162 TATDN1Q6P1N9 297 aa27.65■■■□□ 2.02
PTPN4-207ENST00000460162 TTC6Q86TZ1 520 aa27.65■■■□□ 2.02
PTPN4-207ENST00000460162 PXYLP1Q8TE99 480 aa27.65■■■□□ 2.02
PTPN4-207ENST00000460162 USP17L10C9JJH3 530 aa27.64■■■□□ 2.02
PTPN4-207ENST00000460162 GJB1P08034 283 aa27.64■■■□□ 2.02
PTPN4-207ENST00000460162 PDE6AP16499 860 aa27.64■■■□□ 2.02
PTPN4-207ENST00000460162 HOXA7P31268 230 aaPredicted RBP27.64■■■□□ 2.02
PTPN4-207ENST00000460162 IRX3P78415 501 aaPredicted RBP27.64■■■□□ 2.02
PTPN4-207ENST00000460162 DNAJC2Q99543 621 aaKnown RBP27.64■■■□□ 2.02
PTPN4-207ENST00000460162 MYH7P12883 1935 aa27.63■■■□□ 2.01
PTPN4-207ENST00000460162 MAGEB6P1A0A0J9YX57 407 aa27.63■■■□□ 2.01
PTPN4-207ENST00000460162 GJA8P48165 433 aa27.63■■■□□ 2.01
PTPN4-207ENST00000460162 SLC9C2Q5TAH2 1124 aa27.63■■■□□ 2.01
PTPN4-207ENST00000460162 MORF4L1Q9UBU8 362 aa27.63■■■□□ 2.01
PTPN4-207ENST00000460162 GOLIM4O00461 696 aa27.62■■■□□ 2.01
PTPN4-207ENST00000460162 RNF208Q9H0X6 261 aa27.62■■■□□ 2.01
PTPN4-207ENST00000460162 GH2P01242 217 aa27.61■■■□□ 2.01
PTPN4-207ENST00000460162 CRNKL1Q9BZJ0 848 aaKnown RBP27.61■■■□□ 2.01
PTPN4-207ENST00000460162 ZNF532Q9HCE3 1301 aa27.61■■■□□ 2.01
PTPN4-207ENST00000460162 INHAP05111 366 aa27.6■■■□□ 2.01
PTPN4-207ENST00000460162 ELNP15502 786 aa27.6■■■□□ 2.01
PTPN4-207ENST00000460162 PLXNB2O15031 1838 aa27.6■■■□□ 2.01
PTPN4-207ENST00000460162 TCRBV5S4A2TA0A5A2 114 aa27.59■■■□□ 2.01
PTPN4-207ENST00000460162 UNC93B1Q9H1C4 597 aa27.59■■■□□ 2.01
PTPN4-207ENST00000460162 MYH8P13535 1937 aa27.59■■■□□ 2.01
PTPN4-207ENST00000460162 ATP5JP18859 108 aa27.58■■■□□ 2.01
PTPN4-207ENST00000460162 HERVK_113P62684 666 aa27.58■■■□□ 2.01
PTPN4-207ENST00000460162 C20orf194Q5TEA3 1177 aa27.58■■■□□ 2.01
PTPN4-207ENST00000460162 USP17L2Q6R6M4 530 aa27.58■■■□□ 2.01
PTPN4-207ENST00000460162 GTF3C2Q8WUA4 911 aaPredicted RBP27.58■■■□□ 2.01
PTPN4-207ENST00000460162 C12orf42Q96LP6 360 aa27.58■■■□□ 2.01
PTPN4-207ENST00000460162 PAG1Q9NWQ8 432 aa27.58■■■□□ 2.01
PTPN4-207ENST00000460162 ABCB5Q2M3G0 1257 aa27.57■■■□□ 2
PTPN4-207ENST00000460162 CERKLQ49MI3 558 aaPredicted RBP27.57■■■□□ 2
PTPN4-207ENST00000460162 U2AF1L4Q8WU68 220 aaKnown RBP27.57■■■□□ 2
PTPN4-207ENST00000460162 FEZ1Q99689 392 aa27.57■■■□□ 2
PTPN4-207ENST00000460162 EMILIN3Q9NT22 766 aa27.57■■■□□ 2
PTPN4-207ENST00000460162 TAOK2Q9UL54 1235 aa27.57■■■□□ 2
PTPN4-207ENST00000460162 POLR3DP05423 398 aaPredicted RBP27.56■■■□□ 2
PTPN4-207ENST00000460162 CAPN2P17655 700 aa27.56■■■□□ 2
PTPN4-207ENST00000460162 SHMT1P34896 483 aa27.56■■■□□ 2
PTPN4-207ENST00000460162 PLCD1P51178 756 aa27.56■■■□□ 2
PTPN4-207ENST00000460162 EDC3Q96F86 508 aaKnown RBP27.56■■■□□ 2
PTPN4-207ENST00000460162 P2RX7Q99572 595 aaKnown RBP27.56■■■□□ 2
PTPN4-207ENST00000460162 LRRCC1Q9C099 1032 aa27.56■■■□□ 2
PTPN4-207ENST00000460162 BCL11AQ9H165 835 aa27.56■■■□□ 2
PTPN4-207ENST00000460162 USP14P54578 494 aa27.55■■■□□ 2
PTPN4-207ENST00000460162 GABPAQ06546 454 aa27.55■■■□□ 2
PTPN4-207ENST00000460162 UBE2Q1Q7Z7E8 422 aa27.55■■■□□ 2
PTPN4-207ENST00000460162 LCORLQ8N3X6 602 aa27.55■■■□□ 2
PTPN4-207ENST00000460162 HAUS7Q99871 368 aa27.55■■■□□ 2
PTPN4-207ENST00000460162 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.55■■■□□ 2
PTPN4-207ENST00000460162 BOLA2Q9H3K6 86 aa27.55■■■□□ 2
PTPN4-207ENST00000460162 CABP5Q9NP86 173 aa27.55■■■□□ 2
PTPN4-207ENST00000460162 MCM9Q9NXL9 1143 aa27.55■■■□□ 2
PTPN4-207ENST00000460162 ADD2P35612 726 aa27.54■■■□□ 2
PTPN4-207ENST00000460162 RAB3GAP1Q15042 981 aa27.54■■■□□ 2
PTPN4-207ENST00000460162 GPRC5AQ8NFJ5 357 aa27.54■■■□□ 2
PTPN4-207ENST00000460162 KIAA1683Q9H0B3 1180 aa27.54■■■□□ 2
PTPN4-207ENST00000460162 TXNRD2Q9NNW7 524 aa27.54■■■□□ 2
PTPN4-207ENST00000460162 DCP1AQ9NPI6 582 aaPredicted RBP27.54■■■□□ 2
PTPN4-207ENST00000460162 PAK6Q9NQU5 681 aaPredicted RBP27.54■■■□□ 2
PTPN4-207ENST00000460162 SGPL1O95470 568 aa27.53■■■□□ 2
PTPN4-207ENST00000460162 HMGCRP04035 888 aa27.53■■■□□ 2
PTPN4-207ENST00000460162 SDR42E1Q8WUS8 393 aa27.53■■■□□ 2
PTPN4-207ENST00000460162 SOCS4Q8WXH5 440 aa27.53■■■□□ 2
PTPN4-207ENST00000460162 GJD2Q9UKL4 321 aa27.53■■■□□ 2
PTPN4-207ENST00000460162 CEP290O15078 2479 aa27.53■■■□□ 2
PTPN4-207ENST00000460162 BAZ2AQ9UIF9 1905 aaKnown RBP27.53■■■□□ 2
PTPN4-207ENST00000460162 FARP2O94887 1054 aaPredicted RBP27.51■■□□□ 1.99
PTPN4-207ENST00000460162 ERVK-9P63128 1117 aa27.51■■□□□ 1.99
PTPN4-207ENST00000460162 ERVK-24P63145 666 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms