RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 EDC3Q96F86 508 aaKnown RBP21.59■■□□□ 1.05
MSH6-207ENST00000456246 TMOD4Q9NZQ9 345 aa21.59■■□□□ 1.05
MSH6-207ENST00000456246 SMARCA5O60264 1052 aaPredicted RBP21.58■■□□□ 1.05
MSH6-207ENST00000456246 GDF11O95390 407 aa21.58■■□□□ 1.05
MSH6-207ENST00000456246 FMNL1O95466 1100 aaPredicted RBP21.58■■□□□ 1.05
MSH6-207ENST00000456246 OSBPP22059 807 aa21.58■■□□□ 1.05
MSH6-207ENST00000456246 GCLCP48506 637 aaPredicted RBP21.58■■□□□ 1.05
MSH6-207ENST00000456246 UBE3CQ15386 1083 aa21.58■■□□□ 1.05
MSH6-207ENST00000456246 TRIM47Q96LD4 638 aa21.58■■□□□ 1.05
MSH6-207ENST00000456246 SRRDQ9UH36 339 aa21.58■■□□□ 1.05
MSH6-207ENST00000456246 MYH7P12883 1935 aa21.58■■□□□ 1.04
MSH6-207ENST00000456246 RBBP6Q7Z6E9 1792 aaKnown RBP21.58■■□□□ 1.04
MSH6-207ENST00000456246 POLR3DP05423 398 aaPredicted RBP21.57■■□□□ 1.04
MSH6-207ENST00000456246 MTMR2Q13614 643 aa21.57■■□□□ 1.04
MSH6-207ENST00000456246 SLC4A8Q2Y0W8 1093 aa21.57■■□□□ 1.04
MSH6-207ENST00000456246 TREML2Q5T2D2 321 aa21.57■■□□□ 1.04
MSH6-207ENST00000456246 ZNF333Q96JL9 665 aa21.57■■□□□ 1.04
MSH6-207ENST00000456246 MCM9Q9NXL9 1143 aa21.57■■□□□ 1.04
MSH6-207ENST00000456246 KIAA0100Q14667 2235 aaKnown RBP21.56■■□□□ 1.04
MSH6-207ENST00000456246 USP17L10C9JJH3 530 aa21.56■■□□□ 1.04
MSH6-207ENST00000456246 FAM110CQ1W6H9 321 aa21.56■■□□□ 1.04
MSH6-207ENST00000456246 LCORLQ8N3X6 602 aa21.56■■□□□ 1.04
MSH6-207ENST00000456246 TMEM106CQ9BVX2 250 aa21.56■■□□□ 1.04
MSH6-207ENST00000456246 ATP8A2Q9NTI2 1148 aa21.56■■□□□ 1.04
MSH6-207ENST00000456246 ZSWIM8A7E2V4 1837 aa21.56■■□□□ 1.04
MSH6-207ENST00000456246 PDE4DIPQ5VU43 2346 aa21.56■■□□□ 1.04
MSH6-207ENST00000456246 GH2P01242 217 aa21.55■■□□□ 1.04
MSH6-207ENST00000456246 CERKLQ49MI3 558 aaPredicted RBP21.55■■□□□ 1.04
MSH6-207ENST00000456246 DDRGK1Q96HY6 314 aa21.55■■□□□ 1.04
MSH6-207ENST00000456246 YTHDC1Q96MU7 727 aaKnown RBP21.55■■□□□ 1.04
MSH6-207ENST00000456246 CABP5Q9NP86 173 aa21.55■■□□□ 1.04
MSH6-207ENST00000456246 DCP1AQ9NPI6 582 aaPredicted RBP21.55■■□□□ 1.04
MSH6-207ENST00000456246 PCDHB15Q9Y5E8 787 aa21.55■■□□□ 1.04
MSH6-207ENST00000456246 MYPNQ86TC9 1320 aa21.55■■□□□ 1.04
MSH6-207ENST00000456246 MGAMO43451 1857 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 MBD4O95243 580 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 CTGFP29279 349 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 HOXA7P31268 230 aaPredicted RBP21.54■■□□□ 1.04
MSH6-207ENST00000456246 PLCD1P51178 756 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 IRX3P78415 501 aaPredicted RBP21.54■■□□□ 1.04
MSH6-207ENST00000456246 JAG1P78504 1218 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 GABPAQ06546 454 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 AAMPQ13685 434 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 AMOTL1Q8IY63 956 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 RAET1EQ8TD07 263 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 ARMT1Q9H993 441 aa21.54■■□□□ 1.04
MSH6-207ENST00000456246 ABCB5Q2M3G0 1257 aa21.53■■□□□ 1.04
MSH6-207ENST00000456246 LRRFIP1Q32MZ4 808 aaKnown RBP21.53■■□□□ 1.04
MSH6-207ENST00000456246 USP17L2Q6R6M4 530 aa21.53■■□□□ 1.04
MSH6-207ENST00000456246 SDR42E1Q8WUS8 393 aa21.53■■□□□ 1.04
MSH6-207ENST00000456246 ASCC2Q9H1I8 757 aaPredicted RBP21.53■■□□□ 1.04
MSH6-207ENST00000456246 SWAP70Q9UH65 585 aa21.53■■□□□ 1.04
MSH6-207ENST00000456246 CENPFP49454 3210 aa21.53■■□□□ 1.04
MSH6-207ENST00000456246 TTC41PQ6P2S7 1318 aa21.53■■□□□ 1.04
MSH6-207ENST00000456246 ERC2O15083 957 aa21.52■■□□□ 1.04
MSH6-207ENST00000456246 SHMT1P34896 483 aa21.52■■□□□ 1.04
MSH6-207ENST00000456246 USP14P54578 494 aa21.52■■□□□ 1.04
MSH6-207ENST00000456246 ANKRD13CQ8N6S4 541 aa21.52■■□□□ 1.04
MSH6-207ENST00000456246 KBTBD3Q8NAB2 608 aa21.52■■□□□ 1.04
MSH6-207ENST00000456246 GTF3C2Q8WUA4 911 aaPredicted RBP21.52■■□□□ 1.04
MSH6-207ENST00000456246 ZBTB47Q9UFB7 747 aaPredicted RBP21.52■■□□□ 1.04
MSH6-207ENST00000456246 TNPO2O14787 897 aaKnown RBP21.51■■□□□ 1.03
MSH6-207ENST00000456246 ZFYP08048 801 aaPredicted RBP21.51■■□□□ 1.03
MSH6-207ENST00000456246 SHROOM1Q2M3G4 852 aaPredicted RBP21.51■■□□□ 1.03
MSH6-207ENST00000456246 C12orf42Q96LP6 360 aa21.51■■□□□ 1.03
MSH6-207ENST00000456246 CRBNQ96SW2 442 aa21.51■■□□□ 1.03
MSH6-207ENST00000456246 FEZ1Q99689 392 aa21.51■■□□□ 1.03
MSH6-207ENST00000456246 ECM2O94769 699 aaPredicted RBP21.5■■□□□ 1.03
MSH6-207ENST00000456246 GRK4P32298 578 aa21.5■■□□□ 1.03
MSH6-207ENST00000456246 PRKCZQ05513 592 aa21.5■■□□□ 1.03
MSH6-207ENST00000456246 RAB3GAP1Q15042 981 aa21.5■■□□□ 1.03
MSH6-207ENST00000456246 SLAIN1Q8ND83 568 aa21.5■■□□□ 1.03
MSH6-207ENST00000456246 SH3TC2Q8TF17 1288 aa21.5■■□□□ 1.03
MSH6-207ENST00000456246 COA7Q96BR5 231 aa21.5■■□□□ 1.03
MSH6-207ENST00000456246 KIAA1683Q9H0B3 1180 aa21.5■■□□□ 1.03
MSH6-207ENST00000456246 POTEFA5A3E0 1075 aa21.49■■□□□ 1.03
MSH6-207ENST00000456246 GLRX3O76003 335 aaKnown RBP21.49■■□□□ 1.03
MSH6-207ENST00000456246 MORF4L1Q9UBU8 362 aa21.49■■□□□ 1.03
MSH6-207ENST00000456246 HDAC1Q13547 482 aaPredicted RBP21.48■■□□□ 1.03
MSH6-207ENST00000456246 IRF5Q13568 498 aa21.48■■□□□ 1.03
MSH6-207ENST00000456246 APPBP2Q92624 585 aa21.48■■□□□ 1.03
MSH6-207ENST00000456246 GCC1Q96CN9 775 aa21.48■■□□□ 1.03
MSH6-207ENST00000456246 EMILIN3Q9NT22 766 aa21.48■■□□□ 1.03
MSH6-207ENST00000456246 SLC4A4Q9Y6R1 1079 aa21.48■■□□□ 1.03
MSH6-207ENST00000456246 TNRC18O15417 2968 aaPredicted RBP21.48■■□□□ 1.03
MSH6-207ENST00000456246 PRKAB2O43741 272 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 HERVK_113P62684 666 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 UBXN2AP68543 259 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 SLFNL1Q499Z3 407 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 C12orf60Q5U649 245 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 TMEM179Q6ZVK1 233 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 PXYLP1Q8TE99 480 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 CCDC17Q96LX7 622 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 PUS7LQ9H0K6 701 aaKnown RBP21.47■■□□□ 1.03
MSH6-207ENST00000456246 ARPP21Q9UBL0 812 aaPredicted RBP21.47■■□□□ 1.03
MSH6-207ENST00000456246 MYH8P13535 1937 aa21.47■■□□□ 1.03
MSH6-207ENST00000456246 FLT3LGP49771 235 aa21.46■■□□□ 1.03
MSH6-207ENST00000456246 GIMAP6Q6P9H5 292 aa21.46■■□□□ 1.03
MSH6-207ENST00000456246 BAZ2AQ9UIF9 1905 aaKnown RBP21.46■■□□□ 1.03
MSH6-207ENST00000456246 USP17L15C9J2P7 530 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms