RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	FOXN1	O15353	648 aa		19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	CBFA2T2	O43439	604 aa		19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	NT5DC1	Q5TFE4	455 aa		19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	BARGIN	Q6ZT62	677 aa		19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	ENAH	Q8N8S7	591 aa	Predicted RBP	19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	DPF2	Q92785	391 aa		19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	SHISA4	Q96DD7	197 aa		19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	ARID3A	Q99856	593 aa		19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	SRPRB	Q9Y5M8	271 aa	Known RBP	19.44	■□□□□ 0.7
TOM1-210	ENST00000449058	FGR	P09769	529 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	UBASH3A	P57075	661 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	FUT2	Q10981	343 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	ZNF384	Q8TF68	577 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	MINPP1	Q9UNW1	487 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	SARS	P49591	514 aa	Known RBP	19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	PDE4B	Q07343	736 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	POSTN	Q15063	836 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	CAVIN4	Q5BKX8	364 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	PPP4R3B	Q5MIZ7	849 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	NOL10	Q9BSC4	688 aa	Known RBP	19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	CEP131	Q9UPN4	1083 aa		19.43	■□□□□ 0.7
TOM1-210	ENST00000449058	MYH13	Q9UKX3	1938 aa		19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	PKN1	Q16512	942 aa		19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	FAM84B	Q96KN1	310 aa	Predicted RBP	19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	MAN1B1	Q9UKM7	699 aa		19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	POLR2D	O15514	142 aa	Known RBP	19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	KCNQ2	O43526	872 aa		19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	SERPINC1	P01008	464 aa		19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	PC	P11498	1178 aa	Known RBP	19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	DYNLL1	P63167	89 aa	Known RBP	19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	PPP1R13B	Q96KQ4	1090 aa		19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	FANCL	Q9NW38	375 aa		19.42	■□□□□ 0.7
TOM1-210	ENST00000449058	RGL2	O15211	777 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	SLC10A5	Q5PT55	438 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	LINC00116	Q8NCU8	138 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	KIF18A	Q8NI77	898 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	PHF20	Q9BVI0	1012 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	SERTAD1	Q9UHV2	236 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	LAMB1	P07942	1786 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	PRPF3	O43395	683 aa	Known RBP	19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	NRDC	O43847	1150 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	VSTM4	Q8IW00	320 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	CABP5	Q9NP86	173 aa		19.41	■□□□□ 0.7
TOM1-210	ENST00000449058	CYP2D7	A0A087X1C5	515 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	SEMA3E	O15041	775 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	ACTN4	O43707	911 aa	Known RBP	19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	PRR29	P0C7W0	189 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	FBXO33	Q7Z6M2	555 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	TMX1	Q9H3N1	280 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	XBP1	P17861	261 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	AKAP17A	Q02040	695 aa	Known RBP	19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	MORC3	Q14149	939 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	CFAP100	Q494V2	611 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	CTR9	Q6PD62	1173 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	CATIP	Q7Z7H3	387 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	TRIML1	Q8N9V2	468 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	MLKL	Q8NB16	471 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	SPATA20	Q8TB22	786 aa		19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	RBM28	Q9NW13	759 aa	Known RBP	19.4	■□□□□ 0.7
TOM1-210	ENST00000449058	PDS5A	Q29RF7	1337 aa	Known RBP	19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	TROAP	Q12815	778 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	IFIT1B	Q5T764	474 aa	Known RBP	19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	KANK3	Q6NY19	840 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	CELF1	Q92879	486 aa	Known RBP	19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	CSRNP2	Q9H175	543 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	VPS54	Q9P1Q0	977 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	CALM1	P0DP23	149 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	CALM2	P0DP24	149 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	CALM3	P0DP25	149 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	NAA30	Q147X3	362 aa	Predicted RBP	19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	IQCA1	Q86XH1	822 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	SMARCE1	Q969G3	411 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	INTS13	Q9NVM9	706 aa		19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	AATF	Q9NY61	560 aa	Known RBP eCLIP	19.39	■□□□□ 0.69
TOM1-210	ENST00000449058	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	19.39	■□□□□ 0.69	5e-11	■■■■■ 44.6
TOM1-210	ENST00000449058	MAST2	Q6P0Q8	1798 aa		19.38	■□□□□ 0.69
TOM1-210	ENST00000449058	TRIM75P	A6NK02	468 aa		19.38	■□□□□ 0.69
TOM1-210	ENST00000449058	TUBB4A	P04350	444 aa		19.38	■□□□□ 0.69
TOM1-210	ENST00000449058	KRT2	P35908	639 aa		19.38	■□□□□ 0.69
TOM1-210	ENST00000449058	USP49	Q70CQ1	688 aa		19.38	■□□□□ 0.69
TOM1-210	ENST00000449058	COL24A1	Q17RW2	1714 aa		19.38	■□□□□ 0.69
TOM1-210	ENST00000449058	FAM205C	A6NFA0	338 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	TMEM232	C9JQI7	657 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	DDAH1	O94760	285 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	PLEKHA8P1	O95397	391 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	ZNF18	P17022	549 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	ENOX1	Q8TC92	643 aa	Known RBP	19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	NSUN4	Q96CB9	384 aa	Known RBP	19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	DACH1	Q9UI36	760 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	ZNF215	Q9UL58	517 aa	Predicted RBP	19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	CNTNAP4	Q9C0A0	1308 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	ATP2B1	P20020	1258 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	FMR1	Q06787	632 aa	Known RBP eCLIP	19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	EARS2	Q5JPH6	523 aa	Known RBP	19.37	■□□□□ 0.69
TOM1-210	ENST00000449058		V9GY48	417 aa	Predicted RBP	19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	KIAA1551	Q9HCM1	1747 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	LTBP4	Q8N2S1	1624 aa		19.37	■□□□□ 0.69
TOM1-210	ENST00000449058	ORC4	O43929	436 aa		19.36	■□□□□ 0.69
TOM1-210	ENST00000449058	PRDM1	O75626	825 aa		19.36	■□□□□ 0.69

Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms