RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ELP1O95163 1332 aa8.4□□□□□ -1.07
SYNE1-213ENST00000448038 CAMTA2O94983 1202 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 RDXP35241 583 aaKnown RBP8.39□□□□□ -1.07
SYNE1-213ENST00000448038 SULF1Q8IWU6 871 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 CSRNP1Q96S65 589 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 FRMPD2Q68DX3 1309 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-213ENST00000448038 BACH1O14867 736 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 CFBP00751 764 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 FAM160A1Q05DH4 1040 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 ZSCAN30Q86W11 494 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 AOPEPQ8N6M6 819 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 CCDC112Q8NEF3 446 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 HOMER2Q9NSB8 354 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 C3P01024 1663 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 MEGF6O75095 1541 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 KLRF2D3W0D1 207 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 FAM13AO94988 1023 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 PDIA3P30101 505 aaKnown RBP8.39□□□□□ -1.07
SYNE1-213ENST00000448038 TXKP42681 527 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 UBASH3AP57075 661 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 RABL6Q3YEC7 729 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-213ENST00000448038 NSMFQ6X4W1 530 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 ZNF34Q8IZ26 560 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 DCPSQ96C86 337 aaKnown RBP8.39□□□□□ -1.07
SYNE1-213ENST00000448038 AS3MTQ9HBK9 375 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 GOLGA8HP0CJ92 632 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 GSDMDP57764 484 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 ABCB5Q2M3G0 1257 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 REXO1Q8N1G1 1221 aaKnown RBP8.39□□□□□ -1.07
SYNE1-213ENST00000448038 CCDC17Q96LX7 622 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 ZSCAN12O43309 604 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 CYP2E1P05181 493 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-213ENST00000448038 PLCD1P51178 756 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 LEO1Q8WVC0 666 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-213ENST00000448038 UBR1Q8IWV7 1749 aa8.39□□□□□ -1.07
SYNE1-213ENST00000448038 SMCO2A6NFE2 343 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 DDAH1O94760 285 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 PLA2G12BQ9BX93 195 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 MYO6Q9UM54 1294 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 USP17L8P0C7I0 530 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 MYCLP12524 364 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-213ENST00000448038 CCT6AP40227 531 aaKnown RBP8.38□□□□□ -1.07
SYNE1-213ENST00000448038 IRX3P78415 501 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-213ENST00000448038 SPAG1Q07617 926 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 PDIA6Q15084 440 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 MMRN2Q9H8L6 949 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 CD209Q9NNX6 404 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 SWAP70Q9UH65 585 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 SERPINB13Q9UIV8 391 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 KCNH3Q9ULD8 1083 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 PLEKHG2Q9H7P9 1386 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 RGS12O14924 1447 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 CHMP2AO43633 222 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 VTI1AQ96AJ9 217 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 BRIP1Q9BX63 1249 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 DNAI2Q9GZS0 605 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 ACBD3Q9H3P7 528 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 CUTAO60888 179 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 USP8P40818 1118 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 SPECC1Q5M775 1068 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 CIAPIN1Q6FI81 312 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 SV2BQ7L1I2 683 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.38□□□□□ -1.07
SYNE1-213ENST00000448038 IVNS1ABPQ9Y6Y0 642 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 BRD1O95696 1058 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 PRDX5P30044 214 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 SLFNL1Q499Z3 407 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 SLFN13Q68D06 897 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 CTAGE1Q96RT6 745 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 TAOK3Q9H2K8 898 aa8.38□□□□□ -1.07
SYNE1-213ENST00000448038 CYP2D7A0A087X1C5 515 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 DESP17661 470 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 SSR1P43307 286 aaKnown RBP8.37□□□□□ -1.07
SYNE1-213ENST00000448038 STX17P56962 302 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 SCRN1Q12765 414 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.37□□□□□ -1.07
SYNE1-213ENST00000448038 NEMFO60524 1076 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 TAF4BQ92750 862 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 STRBPQ96SI9 672 aaKnown RBP8.37□□□□□ -1.07
SYNE1-213ENST00000448038 BIN2Q9UBW5 565 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-213ENST00000448038 RIPOR2Q9Y4F9 1068 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 POLR2DO15514 142 aaKnown RBP8.37□□□□□ -1.07
SYNE1-213ENST00000448038 PTPN14Q15678 1187 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 APOA5Q6Q788 366 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 SCG2P13521 617 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 HAUS3Q68CZ6 603 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 ATG9AQ7Z3C6 839 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 TCHPQ9BT92 498 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 KRT13P13646 458 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 GPSM2P81274 684 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 NECTIN1Q15223 517 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 MYSM1Q5VVJ2 828 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 UIMC1Q96RL1 719 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 GTPBP4Q9BZE4 634 aaKnown RBP8.37□□□□□ -1.07
SYNE1-213ENST00000448038 DHX36Q9H2U1 1008 aaKnown RBP8.37□□□□□ -1.07
SYNE1-213ENST00000448038 CNTNAP4Q9C0A0 1308 aa8.37□□□□□ -1.07
SYNE1-213ENST00000448038 SIGLEC1Q9BZZ2 1709 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 CALCRLQ16602 461 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 HSP90B2PQ58FF3 399 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 PRR5LQ6MZQ0 368 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms