RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MMP1P03956 469 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 CCDC70Q6NSX1 233 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 DRC1Q96MC2 740 aa13.47□□□□□ -0.25
MSH6-204ENST00000445503 TNKSO95271 1327 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 ZBTB22O15209 634 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 RBL2Q08999 1139 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 RASGRF1Q13972 1273 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 GDAP1L1Q96MZ0 367 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 HINFPQ9BQA5 517 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 MAP3K15Q6ZN16 1313 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 PHLPP2Q6ZVD8 1323 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 TEX33O43247 280 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 FMNL1O95466 1100 aaPredicted RBP13.46□□□□□ -0.25
MSH6-204ENST00000445503 CCDC152Q4G0S7 254 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 TRIM47Q96LD4 638 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 ISCA1Q9BUE6 129 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 SALL1Q9NSC2 1324 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 CCDC194A0A1B0GVG4 234 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 FAM205CA6NFA0 338 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 STX10O60499 249 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 CASP14P31944 242 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 UBA7P41226 1012 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 STAT6P42226 847 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 MATR3P43243 847 aaKnown RBP eCLIP13.46□□□□□ -0.25
MSH6-204ENST00000445503 FAM47AQ5JRC9 791 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 SYMPKQ92797 1274 aaKnown RBP13.46□□□□□ -0.25
MSH6-204ENST00000445503 CTAGE1Q96RT6 745 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 PARD6BQ9BYG5 372 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 VAT1LQ9HCJ6 419 aa13.46□□□□□ -0.25
MSH6-204ENST00000445503 UBR1Q8IWV7 1749 aa13.46□□□□□ -0.26
MSH6-204ENST00000445503 SLFN14P0C7P3 912 aa13.46□□□□□ -0.26
MSH6-204ENST00000445503 KRT9P35527 623 aa13.46□□□□□ -0.26
MSH6-204ENST00000445503 GYG1P46976 350 aa13.46□□□□□ -0.26
MSH6-204ENST00000445503 PPARAQ07869 468 aa13.46□□□□□ -0.26
MSH6-204ENST00000445503 CCDC148Q8NFR7 591 aa13.46□□□□□ -0.26
MSH6-204ENST00000445503 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.46□□□□□ -0.26
MSH6-204ENST00000445503 PIGBQ92521 554 aa13.46□□□□□ -0.26
MSH6-204ENST00000445503 DEF6Q9H4E7 631 aa13.46□□□□□ -0.26
MSH6-204ENST00000445503 IFNAR1P17181 557 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 TTC38Q5R3I4 469 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 AMOTL1Q8IY63 956 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 IQUBQ8NA54 791 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 BTG4Q9NY30 223 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 NWD1Q149M9 1564 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 MEGF6O75095 1541 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 GNAT2P19087 354 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 CCDC24Q8N4L8 307 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 GPR161Q8N6U8 529 aaKnown RBP13.45□□□□□ -0.26
MSH6-204ENST00000445503 CAPN2P17655 700 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 PLCD1P51178 756 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 FOXP4Q8IVH2 680 aaPredicted RBP13.45□□□□□ -0.26
MSH6-204ENST00000445503 CEP112Q8N8E3 955 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 ACRBPQ8NEB7 543 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 BBXQ8WY36 941 aaPredicted RBP13.45□□□□□ -0.26
MSH6-204ENST00000445503 MKNK2Q9HBH9 465 aa13.45□□□□□ -0.26
MSH6-204ENST00000445503 ERCC3P19447 782 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 ENOX2Q16206 610 aaKnown RBP13.44□□□□□ -0.26
MSH6-204ENST00000445503 DHX37Q8IY37 1157 aaKnown RBP13.44□□□□□ -0.26
MSH6-204ENST00000445503 IGDCC4Q8TDY8 1250 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 TANGO6Q9C0B7 1094 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 RIPOR2Q9Y4F9 1068 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 SLIT1O75093 1534 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 ATP6V1AP38606 617 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 CNGA4Q8IV77 575 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 CRACR2BQ8N4Y2 399 aaPredicted RBP13.44□□□□□ -0.26
MSH6-204ENST00000445503 CDC5LQ99459 802 aaKnown RBP13.44□□□□□ -0.26
MSH6-204ENST00000445503 TUBE1Q9UJT0 475 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 FBXO3Q9UK99 471 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 CACNA1FO60840 1977 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 SETD1AO15047 1707 aaKnown RBP13.44□□□□□ -0.26
MSH6-204ENST00000445503 RGPD1P0DJD0 1748 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 TRIM21P19474 475 aaKnown RBP13.44□□□□□ -0.26
MSH6-204ENST00000445503 USP5P45974 858 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 MTIF2P46199 727 aaKnown RBP13.44□□□□□ -0.26
MSH6-204ENST00000445503 TXLNBQ8N3L3 684 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 JADE2Q9NQC1 790 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 STX8Q9UNK0 236 aa13.44□□□□□ -0.26
MSH6-204ENST00000445503 VGLL3A8MV65 326 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 ADAMTS2O95450 1211 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 SSBP05455 408 aaKnown RBP eCLIP13.43□□□□□ -0.26
MSH6-204ENST00000445503 PTPREP23469 700 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 PTGDRQ13258 359 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 ENOX1Q8TC92 643 aaKnown RBP13.43□□□□□ -0.26
MSH6-204ENST00000445503 PTPAQ15257 358 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 SPATA1Q5VX52 437 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 SLC35F6Q8N357 371 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 WDR17Q8IZU2 1322 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 CCDC178Q5BJE1 867 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 LRP10Q7Z4F1 713 aa13.43□□□□□ -0.26
MSH6-204ENST00000445503 USP17L12C9JPN9 530 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 USP17L21D6R901 530 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 TADA3O75528 432 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 DYNLL1P63167 89 aaKnown RBP13.42□□□□□ -0.26
MSH6-204ENST00000445503 WWC2Q6AWC2 1192 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 C10orf67Q8IYJ2 551 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 CRACR2AQ9BSW2 395 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 FOXP1Q9H334 677 aaPredicted RBP13.42□□□□□ -0.26
MSH6-204ENST00000445503 FMN2Q9NZ56 1722 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 LIFRP42702 1097 aa13.42□□□□□ -0.26
MSH6-204ENST00000445503 FKBP15Q5T1M5 1219 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms