RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 HMGN5P82970 282 aaKnown RBP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 CFAP100Q494V2 611 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 CIAPIN1Q6FI81 312 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 ZSCAN10Q96SZ4 725 aaPredicted RBP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 GMLQ99445 158 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 HPS5Q9UPZ3 1129 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 KIF3AQ9Y496 699 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 SCN9AQ15858 1988 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 COL4A5P29400 1685 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 CPLX1O14810 134 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 DTNBO60941 627 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 METAP2P50579 478 aaKnown RBP eCLIP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 ZNF444Q8N0Y2 327 aaPredicted RBP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 AGBL3Q8NEM8 1001 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 FHDC1Q9C0D6 1143 aaPredicted RBP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 SENP2Q9HC62 589 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 DDX4Q9NQI0 724 aaKnown RBP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 ZBTB12Q9Y330 459 aaPredicted RBP9.43□□□□□ -0.9
CCDC39-201ENST00000442201 ZDHHC9Q9Y397 364 aa9.43□□□□□ -0.9
CCDC39-201ENST00000442201 STX6O43752 255 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 JAK2O60674 1132 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 TNIP1Q15025 636 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 LARP1BQ659C4 914 aaKnown RBP9.42□□□□□ -0.9
CCDC39-201ENST00000442201 CPLX2Q6PUV4 134 aaKnown RBP9.42□□□□□ -0.9
CCDC39-201ENST00000442201 MICU3Q86XE3 530 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 RAB11FIP4Q86YS3 637 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 FAM184AQ8NB25 1140 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 NSUN7Q8NE18 718 aaKnown RBP9.42□□□□□ -0.9
CCDC39-201ENST00000442201 SMARCC2Q8TAQ2 1214 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 OSBPL5Q9H0X9 879 aaPredicted RBP9.42□□□□□ -0.9
CCDC39-201ENST00000442201 PCDHAC2Q9Y5I4 1007 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 PTPDC1A2A3K4 754 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 RASSF7Q02833 373 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 SEC23AQ15436 765 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 FAM47AQ5JRC9 791 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 C16orf86Q6ZW13 317 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 ENAHQ8N8S7 591 aaPredicted RBP9.42□□□□□ -0.9
CCDC39-201ENST00000442201 IDI2Q9BXS1 227 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 FAM13BQ9NYF5 915 aa9.42□□□□□ -0.9
CCDC39-201ENST00000442201 BAZ2AQ9UIF9 1905 aaKnown RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 GOLGA8AA7E2F4 631 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 CLGNO14967 610 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 HLA-DOAP06340 250 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 CDK8P49336 464 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 TFAP4Q01664 338 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 NFIAQ12857 509 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 DLGAP5Q15398 846 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 IFIT1BQ5T764 474 aaKnown RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 FOXD4L5Q5VV16 416 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 SLC44A5Q8NCS7 719 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 FOXD4L4Q8WXT5 416 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 DDX11Q96FC9 970 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 NPM3O75607 178 aaKnown RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 CTDNEP1O95476 244 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 MCM4P33991 863 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 RCAN1P53805 252 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 CCDC178Q5BJE1 867 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 PRMT6Q96LA8 375 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 TDRD3Q9H7E2 651 aaKnown RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 TMOD2Q9NZR1 351 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 BRCA1P38398 1863 aaKnown RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 VPS37CA5D8V6 355 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 SPDYE2BA6NHP3 402 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 SPDYE6P0CI01 402 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 TSPY3P0CV98 308 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 TSPY8P0CW00 308 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 ZSCAN22P10073 491 aaPredicted RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 RXRAP19793 462 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 RASA1P20936 1047 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 CACNB3P54284 484 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 CLEC17AQ6ZS10 378 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 ZNF654Q8IZM8 581 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 MYL10Q9BUA6 226 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 DHX36Q9H2U1 1008 aaKnown RBP9.41□□□□□ -0.9
CCDC39-201ENST00000442201 YY1AP1Q9H869 796 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 SERPINB13Q9UIV8 391 aa9.41□□□□□ -0.9
CCDC39-201ENST00000442201 CDKL5O76039 1030 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 ADD1P35611 737 aaKnown RBP9.4□□□□□ -0.9
CCDC39-201ENST00000442201 EIF6P56537 245 aaKnown RBP9.4□□□□□ -0.9
CCDC39-201ENST00000442201 GRPEL1Q9HAV7 217 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 GOLGB1Q14789 3259 aaKnown RBP9.4□□□□□ -0.9
CCDC39-201ENST00000442201 CCDC196A0A1B0GTZ2 297 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 TCP10Q12799 353 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 ARHGAP27Q6ZUM4 889 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 CATIPQ7Z7H3 387 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 CCDC144CPQ8IYA2 1237 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 FAM198AQ9UFP1 575 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 SWAP70Q9UH65 585 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 MTMR6Q9Y217 621 aa9.4□□□□□ -0.9
CCDC39-201ENST00000442201 GOLGA6L22H0YM25 854 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 NMT2O60551 498 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 ENTPD3O75355 529 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 BAG4O95429 457 aaKnown RBP9.39□□□□□ -0.91
CCDC39-201ENST00000442201 RPS12P25398 132 aaKnown RBP9.39□□□□□ -0.91
CCDC39-201ENST00000442201 GABPAQ06546 454 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 PPP2R5BQ15173 497 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 RTN1Q16799 776 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 DGKHQ86XP1 1220 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 ZSCAN29Q8IWY8 852 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms