RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 WDR90Q96KV7 1748 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 CBFA2T2O43439 604 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 UBASH3AP57075 661 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 HSD3B7Q9H2F3 369 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 ADAM21Q9UKJ8 722 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 PPP2R2CQ9Y2T4 447 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 CLIC4Q9Y696 253 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 ZNF609O15014 1411 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 ZNF202O95125 648 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 LMAN1P49257 510 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 GOLGA8FQ08AF8 430 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 GOLGA8DPQ0D2H9 430 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 GRAPQ13588 217 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 GRAPLQ8TC17 118 aaPredicted RBP9.82□□□□□ -0.84
HPS4-206ENST00000439453 GREM2Q9H772 168 aa9.82□□□□□ -0.84
HPS4-206ENST00000439453 GRIN3BO60391 1043 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 CHGBP05060 677 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 MCMDC2Q4G0Z9 681 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 KCNG4Q8TDN1 519 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 RABGGTAQ92696 567 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 RBM17Q96I25 401 aaKnown RBP9.81□□□□□ -0.84
HPS4-206ENST00000439453 WDR24Q96S15 920 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 MRFAP1Q9Y605 127 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 SERPINC1P01008 464 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 ATP5JP18859 108 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 GNG11P61952 73 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 ISM2Q6H9L7 571 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 SRLQ86TD4 932 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 VSTM4Q8IW00 320 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 KLHDC4Q8TBB5 520 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 H3BQF6 201 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 PPEF1O14829 653 aaPredicted RBP9.81□□□□□ -0.84
HPS4-206ENST00000439453 NOP2P46087 812 aaKnown RBP9.81□□□□□ -0.84
HPS4-206ENST00000439453 RABL6Q3YEC7 729 aaPredicted RBP9.81□□□□□ -0.84
HPS4-206ENST00000439453 CFAP100Q494V2 611 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 IQUBQ8NA54 791 aa9.81□□□□□ -0.84
HPS4-206ENST00000439453 RPGRQ92834 1020 aaKnown RBP9.81□□□□□ -0.84
HPS4-206ENST00000439453 RRP15Q9Y3B9 282 aaKnown RBP9.81□□□□□ -0.84
HPS4-206ENST00000439453 SPTLC2O15270 562 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 ARHGAP6O43182 974 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 YEATS4O95619 227 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 TOP1P11387 765 aaKnown RBP9.8□□□□□ -0.84
HPS4-206ENST00000439453 EXOSC10Q01780 885 aaKnown RBP9.8□□□□□ -0.84
HPS4-206ENST00000439453 LONRF2Q1L5Z9 754 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 AGXT2Q9BYV1 514 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 ATP6V0A2Q9Y487 856 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 NDUFB9Q9Y6M9 179 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 GOLGA6L9A6NEM1 432 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 PDIA3P30101 505 aaKnown RBP9.8□□□□□ -0.84
HPS4-206ENST00000439453 ALDH1B1P30837 517 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 ACTN2P35609 894 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 IRX3P78415 501 aaPredicted RBP9.8□□□□□ -0.84
HPS4-206ENST00000439453 JAKMIP3Q5VZ66 844 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 CERS3Q8IU89 383 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 TMEM139Q8IV31 216 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 ADAMTSL1Q8N6G6 1762 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 POLR3DP05423 398 aaPredicted RBP9.8□□□□□ -0.84
HPS4-206ENST00000439453 FDPSP14324 419 aaKnown RBP9.8□□□□□ -0.84
HPS4-206ENST00000439453 GOLGA1Q92805 767 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 POLR3EQ9NVU0 708 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 ZNF219Q9P2Y4 722 aaPredicted RBP9.8□□□□□ -0.84
HPS4-206ENST00000439453 RFX7Q2KHR2 1363 aa9.8□□□□□ -0.84
HPS4-206ENST00000439453 TMEM232C9JQI7 657 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 DHX16O60231 1041 aaKnown RBP9.79□□□□□ -0.84
HPS4-206ENST00000439453 OTUD7BQ6GQQ9 843 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 CCDC85AQ96PX6 553 aaPredicted RBP9.79□□□□□ -0.84
HPS4-206ENST00000439453 RTFDC1Q9BY42 306 aaPredicted RBP9.79□□□□□ -0.84
HPS4-206ENST00000439453 DBNLQ9UJU6 430 aaKnown RBP9.79□□□□□ -0.84
HPS4-206ENST00000439453 MYH13Q9UKX3 1938 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 CCDC151A5D8V7 595 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 MAP2K7O14733 419 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 PFKFB1P16118 471 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 TXLNAP40222 546 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 MYL5Q02045 173 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 PTPN21Q16825 1174 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 KIFC2Q96AC6 838 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 ZNF274Q96GC6 653 aaPredicted RBP9.79□□□□□ -0.84
HPS4-206ENST00000439453 IRS2Q9Y4H2 1338 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 WTIPA6NIX2 430 aaPredicted RBP9.79□□□□□ -0.84
HPS4-206ENST00000439453 BRD3Q15059 726 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 ARHGAP27Q6ZUM4 889 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 CHMP4CQ96CF2 233 aa9.79□□□□□ -0.84
HPS4-206ENST00000439453 CMA1P23946 247 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 LEKR1Q6ZMV7 388 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 DHX58Q96C10 678 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 BAG1Q99933 345 aaPredicted RBP9.78□□□□□ -0.84
HPS4-206ENST00000439453 SCN4AP35499 1836 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 RFX5P48382 616 aaPredicted RBP9.78□□□□□ -0.84
HPS4-206ENST00000439453 AXDND1Q5T1B0 1012 aaPredicted RBP9.78□□□□□ -0.84
HPS4-206ENST00000439453 MYSM1Q5VVJ2 828 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 CTR9Q6PD62 1173 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 SP8Q8IXZ3 490 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 PSMD1Q99460 953 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 TUBE1Q9UJT0 475 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 IVLP07476 585 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 FKBP4Q02790 459 aaKnown RBP eCLIP9.78□□□□□ -0.84
HPS4-206ENST00000439453 CCDC152Q4G0S7 254 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 TNNI3KQ59H18 835 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 ZFP91Q96JP5 570 aaPredicted RBP9.78□□□□□ -0.84
HPS4-206ENST00000439453 C8orf76Q96K31 380 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms