RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CASZ1Q86V15 1759 aa18.83■□□□□ 0.6
CLCNKA-203ENST00000439316 IFIT3O14879 490 aaKnown RBP18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 MBD4O95243 580 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 FOXP4Q8IVH2 680 aaPredicted RBP18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 STK11IPQ8N1F8 1099 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 SPATA5Q8NB90 893 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 CNNM3Q8NE01 707 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 NAPBQ9H115 298 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 FAM53CQ9NYF3 392 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 PCDHA5Q9Y5H7 936 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 PHLPP2Q6ZVD8 1323 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 MMP1P03956 469 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 MDM2Q00987 491 aaPredicted RBP18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 CTDSPL2Q05D32 466 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 GABPB1Q06547 395 aaPredicted RBP18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 C3orf67Q6ZVT6 689 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 NYXQ9GZU5 481 aa18.82■□□□□ 0.6
CLCNKA-203ENST00000439316 ETF1P62495 437 aaKnown RBP18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 MAP3K12Q12852 859 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 CFAP100Q494V2 611 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 AKNAD1Q5T1N1 836 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 FCHSD1Q86WN1 690 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 MAGEB6Q8N7X4 407 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 KRT23Q9C075 422 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 ZHX1Q9UKY1 873 aaPredicted RBP18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 BMP6P22004 513 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 RASGRF1Q13972 1273 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 FANCLQ9NW38 375 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 TAOK2Q9UL54 1235 aa18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.81■□□□□ 0.6
CLCNKA-203ENST00000439316 TAF1P21675 1872 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 GSG1L2A8MUP6 293 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 KIF20AO95235 890 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 SLC5A1P13866 664 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 GUCY1A2P33402 732 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 TOB1P50616 345 aaPredicted RBP18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 PDE4BQ07343 736 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 NFIXQ14938 502 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 SLC10A5Q5PT55 438 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 TPTE2Q6XPS3 522 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 CCDC24Q8N4L8 307 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 STAG1Q8WVM7 1258 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 ARMT1Q9H993 441 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 INTS13Q9NVM9 706 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 FBXO2Q9UK22 296 aaPredicted RBP18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 RTL9Q8NET4 1388 aa18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 TNS1Q9HBL0 1735 aaKnown RBP18.8■□□□□ 0.6
CLCNKA-203ENST00000439316 BTBD18B2RXH4 712 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 TMEM232C9JQI7 657 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 TOP1P11387 765 aaKnown RBP18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 H2AFXP16104 143 aaPredicted RBP18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 PTPREP23469 700 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 SAFBQ15424 915 aaKnown RBP eCLIP18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 DIS3L2Q8IYB7 885 aaKnown RBP18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 KRT222Q8N1A0 295 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 HELBQ8NG08 1087 aaPredicted RBP18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 MPHOSPH8Q99549 860 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 FOXP1Q9H334 677 aaPredicted RBP18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 HOOK1Q9UJC3 728 aaKnown RBP18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 FOXN1O15353 648 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 SF3B3Q15393 1217 aaKnown RBP18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 RTN1Q16799 776 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 NT5DC1Q5TFE4 455 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 TRIM65Q6PJ69 517 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 MFSD6Q6ZSS7 791 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 TMEM139Q8IV31 216 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 REXO1L1PQ8IX06 675 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 LRRN4CLQ8ND94 238 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 MTA3Q9BTC8 594 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 MAN1B1Q9UKM7 699 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 PNPLA7Q6ZV29 1317 aa18.79■□□□□ 0.6
CLCNKA-203ENST00000439316 GYS1P13807 737 aa18.78■□□□□ 0.6
CLCNKA-203ENST00000439316 RCAN1P53805 252 aa18.78■□□□□ 0.6
CLCNKA-203ENST00000439316 TBX2Q13207 712 aaPredicted RBP18.78■□□□□ 0.6
CLCNKA-203ENST00000439316 RILPL1Q5EBL4 403 aa18.78■□□□□ 0.6
CLCNKA-203ENST00000439316 HOMER1Q86YM7 354 aa18.78■□□□□ 0.6
CLCNKA-203ENST00000439316 TRIM22Q8IYM9 498 aa18.78■□□□□ 0.6
CLCNKA-203ENST00000439316 GNAT2P19087 354 aa18.77■□□□□ 0.6
CLCNKA-203ENST00000439316 HMGB2P26583 209 aaKnown RBP18.77■□□□□ 0.6
CLCNKA-203ENST00000439316 POSTNQ15063 836 aa18.77■□□□□ 0.6
CLCNKA-203ENST00000439316 ZNF827Q17R98 1081 aa18.77■□□□□ 0.6
CLCNKA-203ENST00000439316 ZNF579Q8NAF0 562 aaKnown RBP18.77■□□□□ 0.6
CLCNKA-203ENST00000439316 TFCP2L1Q9NZI6 479 aa18.77■□□□□ 0.6
CLCNKA-203ENST00000439316 COL4A1P02462 1669 aa18.77■□□□□ 0.6
CLCNKA-203ENST00000439316 NPHP1O15259 732 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 DEXIO95424 95 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 ZNF18P17022 549 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 IGHMBP2P38935 993 aaKnown RBP18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 SARSP49591 514 aaKnown RBP18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 GRIN1Q05586 938 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 WTAPQ15007 396 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 ERCC6LQ2NKX8 1250 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 SPECC1Q5M775 1068 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 LCORLQ8N3X6 602 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 ZNF446Q9NWS9 450 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 DNAI1Q9UI46 699 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 KCNJ14Q9UNX9 436 aa18.77■□□□□ 0.59
CLCNKA-203ENST00000439316 ARHGAP6O43182 974 aa18.76■□□□□ 0.59
CLCNKA-203ENST00000439316 PRKAB2O43741 272 aa18.76■□□□□ 0.59
CLCNKA-203ENST00000439316 SART3Q15020 963 aaKnown RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms