RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 APPBP2Q92624 585 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 PARK7Q99497 189 aaKnown RBP18.28■□□□□ 0.52
LIMS3-201ENST00000437679 LNPKQ9C0E8 428 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 ZBTB21Q9ULJ3 1066 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 TRIM17Q9Y577 477 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 SLC4A4Q9Y6R1 1079 aa18.28■□□□□ 0.52
LIMS3-201ENST00000437679 DDX60LQ5H9U9 1706 aaKnown RBP18.28■□□□□ 0.52
LIMS3-201ENST00000437679 CCDC85CA6NKD9 419 aa18.27■□□□□ 0.52
LIMS3-201ENST00000437679 IGHDP01880 384 aa18.27■□□□□ 0.52
LIMS3-201ENST00000437679 ARHGEF6Q15052 776 aa18.27■□□□□ 0.52
LIMS3-201ENST00000437679 CERKLQ49MI3 558 aaPredicted RBP18.27■□□□□ 0.52
LIMS3-201ENST00000437679 FSD1Q9BTV5 496 aa18.27■□□□□ 0.52
LIMS3-201ENST00000437679 WDR18Q9BV38 432 aa18.27■□□□□ 0.52
LIMS3-201ENST00000437679 STAP2Q9UGK3 403 aa18.27■□□□□ 0.52
LIMS3-201ENST00000437679 SLC45A1Q9Y2W3 748 aa18.27■□□□□ 0.52
LIMS3-201ENST00000437679 BAZ2AQ9UIF9 1905 aaKnown RBP18.26■□□□□ 0.51
LIMS3-201ENST00000437679 GH2P01242 217 aa18.26■□□□□ 0.51
LIMS3-201ENST00000437679 PDE1AP54750 535 aa18.26■□□□□ 0.51
LIMS3-201ENST00000437679 JAG1P78504 1218 aa18.26■□□□□ 0.51
LIMS3-201ENST00000437679 KIF22Q14807 665 aa18.26■□□□□ 0.51
LIMS3-201ENST00000437679 PROCA1Q8NCQ7 364 aaPredicted RBP18.26■□□□□ 0.51
LIMS3-201ENST00000437679 EFCC1Q9HA90 598 aa18.26■□□□□ 0.51
LIMS3-201ENST00000437679 CABP5Q9NP86 173 aa18.26■□□□□ 0.51
LIMS3-201ENST00000437679 AGTPBP1Q9UPW5 1226 aa18.26■□□□□ 0.51
LIMS3-201ENST00000437679 CYP2D6P10635 497 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 SHMT1P34896 483 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 HMGCS2P54868 508 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 IRX6P78412 446 aaPredicted RBP18.25■□□□□ 0.51
LIMS3-201ENST00000437679 GABPAQ06546 454 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 ABCB5Q2M3G0 1257 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 SHROOM1Q2M3G4 852 aaPredicted RBP18.25■□□□□ 0.51
LIMS3-201ENST00000437679 FBXO46Q6PJ61 603 aaPredicted RBP18.25■□□□□ 0.51
LIMS3-201ENST00000437679 C17orf99Q6UX52 265 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 OTOP1Q7RTM1 612 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 OSBP2Q969R2 916 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 STRBPQ96SI9 672 aaKnown RBP18.25■□□□□ 0.51
LIMS3-201ENST00000437679 CPA4Q9UI42 421 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 TAOK2Q9UL54 1235 aa18.25■□□□□ 0.51
LIMS3-201ENST00000437679 C19orf81C9J6K1 198 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 CYP2C8P10632 490 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 BACE1P56817 501 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 PABPC4Q13310 644 aaKnown RBP eCLIP18.24■□□□□ 0.51
LIMS3-201ENST00000437679 MTMR2Q13614 643 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 SH3D19Q5HYK7 790 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 CHD1LQ86WJ1 897 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 TMOD4Q9NZQ9 345 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 SWAP70Q9UH65 585 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 PNMA3Q9UL41 463 aa18.24■□□□□ 0.51
LIMS3-201ENST00000437679 ADGRA2Q96PE1 1338 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 USP17L10C9JJH3 530 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 USP17L12C9JPN9 530 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 USP17L21D6R901 530 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 GPAA1O43292 621 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 LACTBP83111 547 aaPredicted RBP18.23■□□□□ 0.51
LIMS3-201ENST00000437679 NUCB1Q02818 461 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 EVX2Q03828 476 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 RAB3GAP1Q15042 981 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 TREML2Q5T2D2 321 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 C12orf60Q5U649 245 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 SMCR8Q8TEV9 937 aaPredicted RBP18.23■□□□□ 0.51
LIMS3-201ENST00000437679 EVI5LQ96CN4 794 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 HPS5Q9UPZ3 1129 aa18.23■□□□□ 0.51
LIMS3-201ENST00000437679 LOC285556D6RIA3 1793 aa18.22■□□□□ 0.51
LIMS3-201ENST00000437679 GNAT2P19087 354 aa18.22■□□□□ 0.51
LIMS3-201ENST00000437679 GIMAP6Q6P9H5 292 aa18.22■□□□□ 0.51
LIMS3-201ENST00000437679 ARPP21Q9UBL0 812 aaPredicted RBP18.22■□□□□ 0.51
LIMS3-201ENST00000437679 MYH8P13535 1937 aa18.21■□□□□ 0.51
LIMS3-201ENST00000437679 CYP2D7A0A087X1C5 515 aa18.21■□□□□ 0.51
LIMS3-201ENST00000437679 M0R2C6 588 aa18.21■□□□□ 0.51
LIMS3-201ENST00000437679 MPHOSPH10O00566 681 aaKnown RBP18.21■□□□□ 0.51
LIMS3-201ENST00000437679 OSBPP22059 807 aa18.21■□□□□ 0.51
LIMS3-201ENST00000437679 CTR9Q6PD62 1173 aa18.21■□□□□ 0.51
LIMS3-201ENST00000437679 DYNLL2Q96FJ2 89 aa18.21■□□□□ 0.51
LIMS3-201ENST00000437679 FEZ1Q99689 392 aa18.21■□□□□ 0.51
LIMS3-201ENST00000437679 GSG1L2A8MUP6 293 aa18.2■□□□□ 0.5
LIMS3-201ENST00000437679 GNRH1P01148 92 aa18.2■□□□□ 0.5
LIMS3-201ENST00000437679 APPP05067 770 aa18.2■□□□□ 0.5
LIMS3-201ENST00000437679 BCRP11274 1271 aa18.2■□□□□ 0.5
LIMS3-201ENST00000437679 ZMYM1Q5SVZ6 1142 aa18.2■□□□□ 0.5
LIMS3-201ENST00000437679 USP17L2Q6R6M4 530 aa18.2■□□□□ 0.5
LIMS3-201ENST00000437679 SLC44A5Q8NCS7 719 aa18.2■□□□□ 0.5
LIMS3-201ENST00000437679 PTPN22Q9Y2R2 807 aa18.2■□□□□ 0.5
LIMS3-201ENST00000437679 TDO2P48775 406 aa18.19■□□□□ 0.5
LIMS3-201ENST00000437679 CDK8P49336 464 aa18.19■□□□□ 0.5
LIMS3-201ENST00000437679 USP14P54578 494 aa18.19■□□□□ 0.5
LIMS3-201ENST00000437679 CAP1Q01518 475 aa18.19■□□□□ 0.5
LIMS3-201ENST00000437679 SBK1Q52WX2 424 aa18.19■□□□□ 0.5
LIMS3-201ENST00000437679 C16orf86Q6ZW13 317 aa18.19■□□□□ 0.5
LIMS3-201ENST00000437679 SEC62Q99442 399 aaKnown RBP18.19■□□□□ 0.5
LIMS3-201ENST00000437679 NACAP1Q9BZK3 213 aa18.19■□□□□ 0.5
LIMS3-201ENST00000437679 MINDY4BA8MYZ0 360 aa18.18■□□□□ 0.5
LIMS3-201ENST00000437679 TRIM6-TRIM34B2RNG4 842 aa18.18■□□□□ 0.5
LIMS3-201ENST00000437679 PATL2C9JE40 543 aaKnown RBP18.18■□□□□ 0.5
LIMS3-201ENST00000437679 ECM2O94769 699 aaPredicted RBP18.18■□□□□ 0.5
LIMS3-201ENST00000437679 PSMC4P43686 418 aa18.18■□□□□ 0.5
LIMS3-201ENST00000437679 GCLCP48506 637 aaPredicted RBP18.18■□□□□ 0.5
LIMS3-201ENST00000437679 IRX3P78415 501 aaPredicted RBP18.18■□□□□ 0.5
LIMS3-201ENST00000437679 SEPT2Q15019 361 aa18.18■□□□□ 0.5
LIMS3-201ENST00000437679 TMEM179Q6ZVK1 233 aa18.18■□□□□ 0.5
LIMS3-201ENST00000437679 TICAM2Q86XR7 235 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms