RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 ANTXR1Q9H6X2 564 aa8.65□□□□□ -1.02
USP54-206ENST00000433394 MSRB2Q9Y3D2 182 aa8.65□□□□□ -1.02
USP54-206ENST00000433394 AGRPO00253 132 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 TNFRSF10CO14798 259 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 GJB6O95452 261 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 SOX4Q06945 474 aaPredicted RBP8.64□□□□□ -1.03
USP54-206ENST00000433394 VHLLQ6RSH7 139 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 UNC5AQ6ZN44 842 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 JAZF1Q86VZ6 243 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 TMEM87BQ96K49 555 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 FANCD2OSQ96PS1 177 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 NACC1Q96RE7 527 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 PCDHGC5Q9Y5F6 944 aa8.64□□□□□ -1.03
USP54-206ENST00000433394 IQCA1LA6NCM1 817 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 GAS2O43903 313 aaKnown RBP8.63□□□□□ -1.03
USP54-206ENST00000433394 DLGAP3O95886 979 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 SELPP16109 830 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 ASPAP45381 313 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 SLC7A5Q01650 507 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 RING1Q06587 406 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 C6orf15Q6UXA7 325 aaPredicted RBP8.63□□□□□ -1.03
USP54-206ENST00000433394 ILDR2Q71H61 639 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 MRPL41Q8IXM3 137 aaKnown RBP8.63□□□□□ -1.03
USP54-206ENST00000433394 SLFN12Q8IYM2 578 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 ST13P5Q8NFI4 369 aaPredicted RBP8.63□□□□□ -1.03
USP54-206ENST00000433394 ACSF2Q96CM8 615 aaPredicted RBP8.63□□□□□ -1.03
USP54-206ENST00000433394 CCDC74BQ96LY2 380 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 DNAJC7Q99615 494 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 USP21Q9UK80 565 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 PPP1R9AQ9ULJ8 1098 aa8.63□□□□□ -1.03
USP54-206ENST00000433394 TM4SF5O14894 197 aa8.62□□□□□ -1.03
USP54-206ENST00000433394 LORP23490 312 aaPredicted RBP8.62□□□□□ -1.03
USP54-206ENST00000433394 USP11P51784 963 aa8.62□□□□□ -1.03
USP54-206ENST00000433394 TTLL4Q14679 1199 aa8.62□□□□□ -1.03
USP54-206ENST00000433394 RNF187Q5TA31 235 aaPredicted RBP8.62□□□□□ -1.03
USP54-206ENST00000433394 ZNF385CQ66K41 422 aaPredicted RBP8.62□□□□□ -1.03
USP54-206ENST00000433394 HOMER1Q86YM7 354 aa8.62□□□□□ -1.03
USP54-206ENST00000433394 BEND7Q8N7W2 519 aaPredicted RBP8.62□□□□□ -1.03
USP54-206ENST00000433394 WHAMMQ8TF30 809 aa8.62□□□□□ -1.03
USP54-206ENST00000433394 ZNF669Q96BR6 464 aaPredicted RBP8.62□□□□□ -1.03
USP54-206ENST00000433394 TRIM11Q96F44 468 aa8.62□□□□□ -1.03
USP54-206ENST00000433394 EPN3Q9H201 632 aa8.62□□□□□ -1.03
USP54-206ENST00000433394 FAM221BA6H8Z2 402 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 FAM181BA6NEQ2 426 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 CHURC1-FNTBB4DL54 471 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 PPM1GO15355 546 aaPredicted RBP8.61□□□□□ -1.03
USP54-206ENST00000433394 APBA3O96018 575 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 HCLS1P14317 486 aaPredicted RBP8.61□□□□□ -1.03
USP54-206ENST00000433394 NRG1Q02297 640 aaPredicted RBP8.61□□□□□ -1.03
USP54-206ENST00000433394 GNPTABQ3T906 1256 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 KIAA1211Q6ZU35 1233 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.61□□□□□ -1.03
USP54-206ENST00000433394 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP54-206ENST00000433394 APPBP2Q92624 585 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.61□□□□□ -1.031e-6■■■■■ 33.1
USP54-206ENST00000433394 TMX1Q9H3N1 280 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 DISC1Q9NRI5 854 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 TJP2Q9UDY2 1190 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 PCOLCE2Q9UKZ9 415 aa8.61□□□□□ -1.03
USP54-206ENST00000433394 FAM86C2PA6NEL3 165 aa8.6□□□□□ -1.03
USP54-206ENST00000433394 ENPP3O14638 875 aa8.6□□□□□ -1.03
USP54-206ENST00000433394 CDC45O75419 566 aa8.6□□□□□ -1.03
USP54-206ENST00000433394 WISP1O95388 367 aa8.6□□□□□ -1.03
USP54-206ENST00000433394 KIAA1211LQ6NV74 962 aa8.6□□□□□ -1.03
USP54-206ENST00000433394 SMYD4Q8IYR2 804 aaPredicted RBP8.6□□□□□ -1.03
USP54-206ENST00000433394 TMEM130Q8N3G9 435 aa8.6□□□□□ -1.03
USP54-206ENST00000433394 SH3TC2Q8TF17 1288 aa8.6□□□□□ -1.03
USP54-206ENST00000433394 SMARCC1Q92922 1105 aaPredicted RBP8.6□□□□□ -1.03
USP54-206ENST00000433394 SLC9A7Q96T83 725 aa8.6□□□□□ -1.03
USP54-206ENST00000433394 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP54-206ENST00000433394 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.59□□□□□ -1.03
USP54-206ENST00000433394 RGS13O14921 159 aa8.59□□□□□ -1.03
USP54-206ENST00000433394 PPP1R12AO14974 1030 aaPredicted RBP8.59□□□□□ -1.03
USP54-206ENST00000433394 CLEC3AO75596 197 aa8.59□□□□□ -1.03
USP54-206ENST00000433394 SPATA31C1P0DKV0 1188 aa8.59□□□□□ -1.03
USP54-206ENST00000433394 SSRP1Q08945 709 aaKnown RBP8.59□□□□□ -1.03
USP54-206ENST00000433394 EGFLAMQ63HQ2 1017 aa8.59□□□□□ -1.03
USP54-206ENST00000433394 LINC00114Q6XXX2 140 aa8.59□□□□□ -1.03
USP54-206ENST00000433394 LRRC47Q8N1G4 583 aaKnown RBP8.59□□□□□ -1.03
USP54-206ENST00000433394 MFSD2AQ8NA29 543 aa8.59□□□□□ -1.03
USP54-206ENST00000433394 CYB5D2Q8WUJ1 264 aa8.59□□□□□ -1.03
USP54-206ENST00000433394 RNPC3Q96LT9 517 aaKnown RBP8.59□□□□□ -1.03
USP54-206ENST00000433394 AKTIPQ9H8T0 292 aa8.59□□□□□ -1.03
USP54-206ENST00000433394 FAM229AH3BQW9 127 aa8.58□□□□□ -1.04
USP54-206ENST00000433394 DRD2P14416 443 aa8.58□□□□□ -1.04
USP54-206ENST00000433394 GLB1P16278 677 aa8.58□□□□□ -1.04
USP54-206ENST00000433394 IBSPP21815 317 aaPredicted RBP8.58□□□□□ -1.04
USP54-206ENST00000433394 CAP2P40123 477 aa8.58□□□□□ -1.04
USP54-206ENST00000433394 ZNF143P52747 638 aaPredicted RBP8.58□□□□□ -1.04
USP54-206ENST00000433394 SNRPNP63162 240 aaKnown RBP8.58□□□□□ -1.04
USP54-206ENST00000433394 ANKRD13AQ8IZ07 590 aa8.58□□□□□ -1.04
USP54-206ENST00000433394 NLGN1Q8N2Q7 840 aa8.58□□□□□ -1.04
USP54-206ENST00000433394 THAP3Q8WTV1 239 aaPredicted RBP8.58□□□□□ -1.04
USP54-206ENST00000433394 KIF2CQ99661 725 aa8.58□□□□□ -1.04
USP54-206ENST00000433394 FOXQ1Q9C009 403 aa8.58□□□□□ -1.04
USP54-206ENST00000433394 ZNF214Q9UL59 606 aaPredicted RBP8.58□□□□□ -1.04
USP54-206ENST00000433394 KDM2BQ8NHM5 1336 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 UPK3BL1B0FP48 263 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 C9orf172C9J069 976 aa8.57□□□□□ -1.04
USP54-206ENST00000433394 UPK3BL2E5RIL1 263 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms