RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 HLA-DOAP06340 250 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 SLC10A3P09131 477 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 GJA5P36382 358 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 VEGFBP49765 207 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 SHROOM1Q2M3G4 852 aaPredicted RBP14.85□□□□□ -0.03
USP40-205ENST00000430158 C16orf86Q6ZW13 317 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 RASAL3Q86YV0 1011 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 SLC44A5Q8NCS7 719 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 DSCC1Q9BVC3 393 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 NBPF3Q9H094 633 aa14.85□□□□□ -0.03
USP40-205ENST00000430158 GREB1LQ9C091 1923 aaPredicted RBP14.84□□□□□ -0.03
USP40-205ENST00000430158 CTNND1O60716 968 aaKnown RBP14.84□□□□□ -0.03
USP40-205ENST00000430158 CDC45O75419 566 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 CAP2P40123 477 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 PTH1RQ03431 593 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 CYP4F22Q6NT55 531 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 RUFY2Q8WXA3 655 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 ZIC5Q96T25 663 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 NACAP1Q9BZK3 213 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 ANAPC4Q9UJX5 808 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 PCNTO95613 3336 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 LAMA4Q16363 1823 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 THSD7BQ9C0I4 1608 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 PTPRFP10586 1907 aa14.84□□□□□ -0.03
USP40-205ENST00000430158 SPDYE5A6NIY4 337 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 APPP05067 770 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 FGRP09769 529 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 GUCY1A2P33402 732 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 TDO2P48775 406 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 CDK8P49336 464 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 ZNF157P51786 506 aaPredicted RBP14.83□□□□□ -0.04
USP40-205ENST00000430158 MFAP1P55081 439 aaKnown RBP14.83□□□□□ -0.04
USP40-205ENST00000430158 SPRYD7Q5W111 196 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 SCYL3Q8IZE3 742 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 WNK4Q96J92 1243 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 CAPNS2Q96L46 248 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 LSG1Q9H089 658 aaKnown RBP14.83□□□□□ -0.04
USP40-205ENST00000430158 NAPBQ9H115 298 aa14.83□□□□□ -0.04
USP40-205ENST00000430158 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.83□□□□□ -0.04
USP40-205ENST00000430158 PTPRAP18433 802 aa14.82□□□□□ -0.04
USP40-205ENST00000430158 PPARAQ07869 468 aa14.82□□□□□ -0.04
USP40-205ENST00000430158 CCDC102AQ96A19 550 aa14.82□□□□□ -0.04
USP40-205ENST00000430158 SLC10A4Q96EP9 437 aa14.82□□□□□ -0.04
USP40-205ENST00000430158 DDRGK1Q96HY6 314 aa14.82□□□□□ -0.04
USP40-205ENST00000430158 ELP3Q9H9T3 547 aa14.82□□□□□ -0.04
USP40-205ENST00000430158 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.82□□□□□ -0.04
USP40-205ENST00000430158 SWAP70Q9UH65 585 aa14.82□□□□□ -0.04
USP40-205ENST00000430158 WDR33Q9C0J8 1336 aaKnown RBP14.82□□□□□ -0.04
USP40-205ENST00000430158 MINDY4BA8MYZ0 360 aa14.81□□□□□ -0.04
USP40-205ENST00000430158 RASA1P20936 1047 aa14.81□□□□□ -0.04
USP40-205ENST00000430158 ERO1BQ86YB8 467 aa14.81□□□□□ -0.04
USP40-205ENST00000430158 CRACR2BQ8N4Y2 399 aaPredicted RBP14.81□□□□□ -0.04
USP40-205ENST00000430158 NKX2-3Q8TAU0 364 aa14.81□□□□□ -0.04
USP40-205ENST00000430158 MAP4K1Q92918 833 aa14.81□□□□□ -0.04
USP40-205ENST00000430158 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.81□□□□□ -0.04
USP40-205ENST00000430158 INCENPQ9NQS7 918 aa14.81□□□□□ -0.04
USP40-205ENST00000430158 CSADQ9Y600 493 aa14.81□□□□□ -0.04
USP40-205ENST00000430158 AOC2O75106 756 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 GDF11O95390 407 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 PPATQ06203 517 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 CCDC84Q86UT8 332 aaPredicted RBP14.8□□□□□ -0.04
USP40-205ENST00000430158 OPTNQ96CV9 577 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 MS4A4AQ96JQ5 239 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 GINM1Q9NU53 330 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 ZBTB21Q9ULJ3 1066 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 KCNH4Q9UQ05 1017 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 AFG3L2Q9Y4W6 797 aa14.8□□□□□ -0.04
USP40-205ENST00000430158 ZBTB48P10074 688 aaPredicted RBP14.79□□□□□ -0.04
USP40-205ENST00000430158 AKR1B1P15121 316 aa14.79□□□□□ -0.04
USP40-205ENST00000430158 ECE1P42892 770 aa14.79□□□□□ -0.04
USP40-205ENST00000430158 CTDSPL2Q05D32 466 aa14.79□□□□□ -0.04
USP40-205ENST00000430158 PPIL2Q13356 520 aa14.79□□□□□ -0.04
USP40-205ENST00000430158 MOGSQ13724 837 aa14.79□□□□□ -0.04
USP40-205ENST00000430158 CERKLQ49MI3 558 aaPredicted RBP14.79□□□□□ -0.04
USP40-205ENST00000430158 SIAH1Q8IUQ4 282 aa14.79□□□□□ -0.04
USP40-205ENST00000430158 TBC1D10CQ8IV04 446 aa14.79□□□□□ -0.04
USP40-205ENST00000430158 IGKV6D-41A0A0C4DH26 115 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 TESPA1A2RU30 521 aaPredicted RBP14.78□□□□□ -0.04
USP40-205ENST00000430158 IRF6O14896 467 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 ORC4O43929 436 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 GH2P01242 217 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 ASNSP08243 561 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 MAP2K2P36507 400 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 HAND2P61296 217 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 NOGQ13253 232 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 ABCB5Q2M3G0 1257 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 AMOTL1Q8IY63 956 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 JMYQ8N9B5 988 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 CCDC17Q96LX7 622 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 WDR18Q9BV38 432 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 TAF6LQ9Y6J9 622 aa14.78□□□□□ -0.04
USP40-205ENST00000430158 PRDM1O75626 825 aa14.77□□□□□ -0.05
USP40-205ENST00000430158 CYP21A2P08686 494 aa14.77□□□□□ -0.05
USP40-205ENST00000430158 KIF23Q02241 960 aaPredicted RBP14.77□□□□□ -0.05
USP40-205ENST00000430158 NECTIN1Q15223 517 aa14.77□□□□□ -0.05
USP40-205ENST00000430158 STAG1Q8WVM7 1258 aa14.77□□□□□ -0.05
USP40-205ENST00000430158 TRIM34Q9BYJ4 488 aa14.77□□□□□ -0.05
USP40-205ENST00000430158 CTNNA3Q9UI47 895 aa14.77□□□□□ -0.05
USP40-205ENST00000430158 ZHX2Q9Y6X8 837 aa14.77□□□□□ -0.05
USP40-205ENST00000430158 PLIN4Q96Q06 1357 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms