RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 TMEM232C9JQI7 657 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 RPS6KA4O75676 772 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 CDKL5O76039 1030 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 TFAP4Q01664 338 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 PTPAQ15257 358 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 STAG1Q8WVM7 1258 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 POLR3EQ9NVU0 708 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 KCNH3Q9ULD8 1083 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 UFL1O94874 794 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 MCM7P33993 719 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 PIK3AP1Q6ZUJ8 805 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 TDRD7Q8NHU6 1098 aaKnown RBP13.74□□□□□ -0.21
PTPRN-204ENST00000423636 BLZF1Q9H2G9 400 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 MYH13Q9UKX3 1938 aa13.74□□□□□ -0.21
PTPRN-204ENST00000423636 COL14A1Q05707 1796 aaKnown RBP13.73□□□□□ -0.21
PTPRN-204ENST00000423636 VWA3AA6NCI4 1184 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 FMNL1O95466 1100 aaPredicted RBP13.73□□□□□ -0.21
PTPRN-204ENST00000423636 HSPA1LP34931 641 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 UBE4AQ14139 1066 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 SRBD1Q8N5C6 995 aaKnown RBP13.73□□□□□ -0.21
PTPRN-204ENST00000423636 MAP3K14Q99558 947 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 CSRNP2Q9H175 543 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 MMP1P03956 469 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 TM4SF1P30408 202 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 DOK7Q18PE1 504 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 BARGINQ6ZT62 677 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 METTL16Q86W50 562 aaKnown RBP13.73□□□□□ -0.21
PTPRN-204ENST00000423636 PLA2G4DQ86XP0 818 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 MKNK2Q9HBH9 465 aa13.73□□□□□ -0.21
PTPRN-204ENST00000423636 SCNN1DP51172 638 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 ATP2B2Q01814 1243 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 DHX8Q14562 1220 aaKnown RBP13.72□□□□□ -0.21
PTPRN-204ENST00000423636 SF3B3Q15393 1217 aaKnown RBP13.72□□□□□ -0.21
PTPRN-204ENST00000423636 RBM43Q6ZSC3 357 aaKnown RBP13.72□□□□□ -0.21
PTPRN-204ENST00000423636 BRAPQ7Z569 592 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 CNNM2Q9H8M5 875 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 PHLPP1O60346 1717 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 A0A087X0B3 334 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 GOLGA6L6A8MZA4 724 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 SKILP12757 684 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 GPSM2P81274 684 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 CATIPQ7Z7H3 387 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 SGMS1Q86VZ5 419 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 IQCA1Q86XH1 822 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 FANCLQ9NW38 375 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 MYH7P12883 1935 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 BCL9LQ86UU0 1499 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 FAM196BA6NMK8 535 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 RIOK3O14730 519 aaKnown RBP13.72□□□□□ -0.21
PTPRN-204ENST00000423636 SERPINC1P01008 464 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 IFNAR1P17181 557 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 BMP6P22004 513 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 CACNB3P54284 484 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 RPGRQ92834 1020 aaKnown RBP13.72□□□□□ -0.21
PTPRN-204ENST00000423636 AFF2P51816 1311 aa13.72□□□□□ -0.21
PTPRN-204ENST00000423636 ERCC3P19447 782 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 LIFRP42702 1097 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 CLEC4GQ6UXB4 293 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 CPLX3Q8WVH0 158 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 PP2D1A8MPX8 630 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 YEATS4O95619 227 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 SEC23AQ15436 765 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 PKN1Q16512 942 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 CFAP100Q494V2 611 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 FBXO33Q7Z6M2 555 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 KCNQ5Q9NR82 932 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 PCDHAC2Q9Y5I4 1007 aa13.71□□□□□ -0.21
PTPRN-204ENST00000423636 LDHBP07195 334 aaKnown RBP13.7□□□□□ -0.22
PTPRN-204ENST00000423636 NLRP5P59047 1200 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 VPS72Q15906 364 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 SAMD1Q6SPF0 538 aaPredicted RBP13.7□□□□□ -0.22
PTPRN-204ENST00000423636 CENPFP49454 3210 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 CMA1P23946 247 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 PRR5LQ6MZQ0 368 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 UBA5Q9GZZ9 404 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 PLEKHG2Q9H7P9 1386 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 TNNT1P13805 278 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 ALX1Q15699 326 aa13.7□□□□□ -0.22
PTPRN-204ENST00000423636 RNF41Q9H4P4 317 aaPredicted RBP13.7□□□□□ -0.22
PTPRN-204ENST00000423636 GNAT2P19087 354 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 KRI1Q8N9T8 703 aaKnown RBP13.69□□□□□ -0.22
PTPRN-204ENST00000423636 GJD4Q96KN9 370 aaPredicted RBP13.69□□□□□ -0.22
PTPRN-204ENST00000423636 CRNKL1Q9BZJ0 848 aaKnown RBP13.69□□□□□ -0.22
PTPRN-204ENST00000423636 PLCH1Q4KWH8 1693 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 DEXIO95424 95 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 GTF2IP78347 998 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 FMR1Q06787 632 aaKnown RBP eCLIP13.69□□□□□ -0.22
PTPRN-204ENST00000423636 SHROOM1Q2M3G4 852 aaPredicted RBP13.69□□□□□ -0.22
PTPRN-204ENST00000423636 LRRC8AQ8IWT6 810 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 PNPLA7Q6ZV29 1317 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 TROAPQ12815 778 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 USP17L2Q6R6M4 530 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 PRDM10Q9NQV6 1147 aa13.69□□□□□ -0.22
PTPRN-204ENST00000423636 SCAF8Q9UPN6 1271 aaKnown RBP13.69□□□□□ -0.22
PTPRN-204ENST00000423636 SERPINB2P05120 415 aa13.68□□□□□ -0.22
PTPRN-204ENST00000423636 CDK11BP21127 795 aaKnown RBP13.68□□□□□ -0.22
PTPRN-204ENST00000423636 U2AF2P26368 475 aaKnown RBP eCLIP13.68□□□□□ -0.22
PTPRN-204ENST00000423636 TYW1BQ6NUM6 668 aa13.68□□□□□ -0.22
PTPRN-204ENST00000423636 HEATR3Q7Z4Q2 680 aa13.68□□□□□ -0.22
PTPRN-204ENST00000423636 CTCFLQ8NI51 663 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms