RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 ANKRD13AQ8IZ07 590 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 STAG1Q8WVM7 1258 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 ZKSCAN4Q969J2 545 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-202ENST00000422991 ZNF287Q9HBT7 754 aa20.17■□□□□ 0.82
COL7A1-202ENST00000422991 SLC27A2O14975 620 aa20.16■□□□□ 0.82
COL7A1-202ENST00000422991 ORC4O43929 436 aa20.16■□□□□ 0.82
COL7A1-202ENST00000422991 SEC24BO95487 1268 aa20.16■□□□□ 0.82
COL7A1-202ENST00000422991 CERKLQ49MI3 558 aaPredicted RBP20.16■□□□□ 0.82
COL7A1-202ENST00000422991 CREB3L3Q68CJ9 461 aa20.16■□□□□ 0.82
COL7A1-202ENST00000422991 CLMNQ96JQ2 1002 aa20.16■□□□□ 0.82
COL7A1-202ENST00000422991 USP26Q9BXU7 913 aa20.16■□□□□ 0.82
COL7A1-202ENST00000422991 SNCAIPQ9Y6H5 919 aa20.16■□□□□ 0.82
COL7A1-202ENST00000422991 TAF6LQ9Y6J9 622 aa20.16■□□□□ 0.82
COL7A1-202ENST00000422991 PRDM1O75626 825 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 GDF11O95390 407 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 PCP11498 1178 aaKnown RBP20.15■□□□□ 0.82
COL7A1-202ENST00000422991 ECE1P42892 770 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 JAG1P78504 1218 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 SHROOM1Q2M3G4 852 aaPredicted RBP20.15■□□□□ 0.82
COL7A1-202ENST00000422991 SCYL3Q8IZE3 742 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 RNF41Q9H4P4 317 aaPredicted RBP20.15■□□□□ 0.82
COL7A1-202ENST00000422991 MKNK2Q9HBH9 465 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 INCENPQ9NQS7 918 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 CSADQ9Y600 493 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 NEDD4P46934 1319 aa20.15■□□□□ 0.82
COL7A1-202ENST00000422991 PLIN4Q96Q06 1357 aa20.14■□□□□ 0.81
COL7A1-202ENST00000422991 WDR33Q9C0J8 1336 aaKnown RBP20.14■□□□□ 0.81
COL7A1-202ENST00000422991 HSPA1AP0DMV8 641 aaKnown RBP20.14■□□□□ 0.81
COL7A1-202ENST00000422991 HSPA1BP0DMV9 641 aaKnown RBP20.14■□□□□ 0.81
COL7A1-202ENST00000422991 MFSD6Q6ZSS7 791 aa20.14■□□□□ 0.81
COL7A1-202ENST00000422991 HHIPL1Q96JK4 782 aa20.14■□□□□ 0.81
COL7A1-202ENST00000422991 CCDC17Q96LX7 622 aa20.14■□□□□ 0.81
COL7A1-202ENST00000422991 ZBTB21Q9ULJ3 1066 aa20.14■□□□□ 0.81
COL7A1-202ENST00000422991 AKR1B1P15121 316 aa20.13■□□□□ 0.81
COL7A1-202ENST00000422991 HSPA4P34932 840 aa20.13■□□□□ 0.81
COL7A1-202ENST00000422991 ABCB5Q2M3G0 1257 aa20.13■□□□□ 0.81
COL7A1-202ENST00000422991 RNF20Q5VTR2 975 aa20.13■□□□□ 0.81
COL7A1-202ENST00000422991 PAXIP1Q6ZW49 1069 aaPredicted RBP20.13■□□□□ 0.81
COL7A1-202ENST00000422991 KCNB2Q92953 911 aa20.13■□□□□ 0.81
COL7A1-202ENST00000422991 CAPNS2Q96L46 248 aa20.13■□□□□ 0.81
COL7A1-202ENST00000422991 ELP3Q9H9T3 547 aa20.13■□□□□ 0.81
COL7A1-202ENST00000422991 GINM1Q9NU53 330 aa20.13■□□□□ 0.81
COL7A1-202ENST00000422991 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.13■□□□□ 0.81
COL7A1-202ENST00000422991 GH2P01242 217 aa20.12■□□□□ 0.81
COL7A1-202ENST00000422991 ASNSP08243 561 aa20.12■□□□□ 0.81
COL7A1-202ENST00000422991 STOX1Q6ZVD7 989 aa20.12■□□□□ 0.81
COL7A1-202ENST00000422991 PICK1Q9NRD5 415 aa20.12■□□□□ 0.81
COL7A1-202ENST00000422991 E7EWF7 191 aa20.11■□□□□ 0.81
COL7A1-202ENST00000422991 GUCY1A2P33402 732 aa20.11■□□□□ 0.81
COL7A1-202ENST00000422991 RRP12Q5JTH9 1297 aaKnown RBP20.11■□□□□ 0.81
COL7A1-202ENST00000422991 TMEM179Q6ZVK1 233 aa20.11■□□□□ 0.81
COL7A1-202ENST00000422991 RASEFQ8IZ41 740 aa20.11■□□□□ 0.81
COL7A1-202ENST00000422991 ZNF444Q8N0Y2 327 aaPredicted RBP20.11■□□□□ 0.81
COL7A1-202ENST00000422991 CNNM2Q9H8M5 875 aa20.11■□□□□ 0.81
COL7A1-202ENST00000422991 CABP5Q9NP86 173 aa20.11■□□□□ 0.81
COL7A1-202ENST00000422991 TOMM22Q9NS69 142 aa20.11■□□□□ 0.81
COL7A1-202ENST00000422991 PTPRFP10586 1907 aa20.11■□□□□ 0.81
COL7A1-202ENST00000422991 SPDYE5A6NIY4 337 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 MPHOSPH10O00566 681 aaKnown RBP20.1■□□□□ 0.81
COL7A1-202ENST00000422991 RANBP6O60518 1105 aaKnown RBP20.1■□□□□ 0.81
COL7A1-202ENST00000422991 PTPRAP18433 802 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 NT5C2P49902 561 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 TSGA10IPQ3SY00 556 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 FAM47AQ5JRC9 791 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 CYP4F22Q6NT55 531 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 RGMBQ6NW40 437 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 ERO1BQ86YB8 467 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 RASAL3Q86YV0 1011 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 NKX2-3Q8TAU0 364 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 CNKSR2Q8WXI2 1034 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 SLC10A4Q96EP9 437 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.1■□□□□ 0.81
COL7A1-202ENST00000422991 KRT23Q9C075 422 aa20.1■□□□□ 0.81
COL7A1-202ENST00000422991 THSD7BQ9C0I4 1608 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 B4E1Z4 1266 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 TSPY3P0CV98 308 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 TSPY8P0CW00 308 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 ZKSCAN1P17029 563 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-202ENST00000422991 MCCP23508 829 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 ZNF157P51786 506 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-202ENST00000422991 TFAP4Q01664 338 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 CCDC84Q86UT8 332 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-202ENST00000422991 NEDD1Q8NHV4 660 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 ESR2Q92731 530 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 WNK4Q96J92 1243 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 BACH2Q9BYV9 841 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-202ENST00000422991 SNX14Q9Y5W7 946 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 MYH4Q9Y623 1939 aa20.09■□□□□ 0.81
COL7A1-202ENST00000422991 IGKV6D-41A0A0C4DH26 115 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 TSPY2A6NKD2 308 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 USP17L5A8MUK1 530 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 KDM4AO75164 1064 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 GJA5P36382 358 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 MAP2K1Q02750 393 aaPredicted RBP20.08■□□□□ 0.81
COL7A1-202ENST00000422991 PPATQ06203 517 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 TRDNQ13061 729 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 GRM1Q13255 1194 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 PPIL2Q13356 520 aa20.08■□□□□ 0.81
COL7A1-202ENST00000422991 SEPT2Q15019 361 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms