RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GOLGA8BA8MQT2 603 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 DDNO94850 711 aaPredicted RBP20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 TFAP4Q01664 338 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 ME3Q16798 604 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 FAM83AQ86UY5 434 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 CCDC83Q8IWF9 413 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 ZFPM1Q8IX07 1006 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 CSRNP1Q96S65 589 aa20.1■□□□□ 0.81
CCDC28B-202ENST00000421922 ATRNL1Q5VV63 1379 aa20.09■□□□□ 0.81
CCDC28B-202ENST00000421922 LARGE1O95461 756 aa20.09■□□□□ 0.81
CCDC28B-202ENST00000421922 LIFRP42702 1097 aa20.09■□□□□ 0.81
CCDC28B-202ENST00000421922 CUL4AQ13619 759 aa20.09■□□□□ 0.81
CCDC28B-202ENST00000421922 IFIT1BQ5T764 474 aaKnown RBP20.09■□□□□ 0.81
CCDC28B-202ENST00000421922 ZNF274Q96GC6 653 aaPredicted RBP20.09■□□□□ 0.81
CCDC28B-202ENST00000421922 INTS4Q96HW7 963 aaKnown RBP20.09■□□□□ 0.81
CCDC28B-202ENST00000421922 DDTLA6NHG4 134 aaPredicted RBP20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 SIPA1L1O43166 1804 aa20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 RASA1P20936 1047 aa20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 APOBEC3FQ8IUX4 373 aaKnown RBP20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 FOXP4Q8IVH2 680 aaPredicted RBP20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 IGDCC4Q8TDY8 1250 aa20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 LY9Q9HBG7 655 aa20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 GPHNQ9NQX3 736 aaPredicted RBP20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 SLC12A7Q9Y666 1083 aa20.08■□□□□ 0.8
CCDC28B-202ENST00000421922 GABPAQ06546 454 aa20.07■□□□□ 0.8
CCDC28B-202ENST00000421922 NECAB1Q8N987 351 aa20.07■□□□□ 0.8
CCDC28B-202ENST00000421922 CWC22Q9HCG8 908 aaKnown RBP20.07■□□□□ 0.8
CCDC28B-202ENST00000421922 ADARB2Q9NS39 739 aaKnown RBP20.07■□□□□ 0.8
CCDC28B-202ENST00000421922 HACL1Q9UJ83 578 aa20.07■□□□□ 0.8
CCDC28B-202ENST00000421922 SMC3Q9UQE7 1217 aa20.07■□□□□ 0.8
CCDC28B-202ENST00000421922 ZBTB43O43298 467 aa20.06■□□□□ 0.8
CCDC28B-202ENST00000421922 DHX16O60231 1041 aaKnown RBP20.06■□□□□ 0.8
CCDC28B-202ENST00000421922 PFKFB2O60825 505 aa20.06■□□□□ 0.8
CCDC28B-202ENST00000421922 EGFRP00533 1210 aa20.06■□□□□ 0.8
CCDC28B-202ENST00000421922 EPS15P42566 896 aa20.06■□□□□ 0.8
CCDC28B-202ENST00000421922 SGMS1Q86VZ5 419 aa20.06■□□□□ 0.8
CCDC28B-202ENST00000421922 GTF3C6Q969F1 213 aa20.06■□□□□ 0.8
CCDC28B-202ENST00000421922 HERC5Q9UII4 1024 aaKnown RBP20.06■□□□□ 0.8
CCDC28B-202ENST00000421922 CNTNAP1P78357 1384 aa20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 MPHOSPH10O00566 681 aaKnown RBP20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 METAP2P50579 478 aaKnown RBP eCLIP20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 SH3BP5LQ7L8J4 393 aa20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 CATIPQ7Z7H3 387 aa20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 MICU3Q86XE3 530 aa20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 ENAHQ8N8S7 591 aaPredicted RBP20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 NKX2-3Q8TAU0 364 aa20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 TRPM4Q8TD43 1214 aa20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 CCDC17Q96LX7 622 aa20.05■□□□□ 0.8
CCDC28B-202ENST00000421922 GOLGA8AA7E2F4 631 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 KIF3CO14782 793 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 CPLX1O14810 134 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 PDIA3P30101 505 aaKnown RBP20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 EVCP57679 992 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 CCT2P78371 535 aaKnown RBP20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 RASA3Q14644 834 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 PPP4R3BQ5MIZ7 849 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 CPLX2Q6PUV4 134 aaKnown RBP20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 APOA5Q6Q788 366 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 NEDD1Q8NHV4 660 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 TMEM39BQ9GZU3 492 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 KAT14Q9H8E8 782 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 PLIN4Q96Q06 1357 aa20.04■□□□□ 0.8
CCDC28B-202ENST00000421922 SHMT1P34896 483 aa20.03■□□□□ 0.8
CCDC28B-202ENST00000421922 CERKLQ49MI3 558 aaPredicted RBP20.03■□□□□ 0.8
CCDC28B-202ENST00000421922 ANGEL2Q5VTE6 544 aaKnown RBP20.03■□□□□ 0.8
CCDC28B-202ENST00000421922 HOOK2Q96ED9 719 aa20.03■□□□□ 0.8
CCDC28B-202ENST00000421922 TCP11L1Q9NUJ3 509 aa20.03■□□□□ 0.8
CCDC28B-202ENST00000421922 GGA3Q9NZ52 723 aa20.03■□□□□ 0.8
CCDC28B-202ENST00000421922 BRPF3Q9ULD4 1205 aa20.03■□□□□ 0.8
CCDC28B-202ENST00000421922 GLTPD2A6NH11 291 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 CALM1P0DP23 149 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 CALM2P0DP24 149 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 CALM3P0DP25 149 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 SEC23AQ15436 765 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 DGKHQ86XP1 1220 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 ZNF654Q8IZM8 581 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 NUP133Q8WUM0 1156 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 L3MBTL3Q96JM7 780 aaPredicted RBP20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 CIZ1Q9ULV3 898 aaPredicted RBP20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 STX8Q9UNK0 236 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 KIF3AQ9Y496 699 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 SCN4AP35499 1836 aa20.02■□□□□ 0.8
CCDC28B-202ENST00000421922 IQCA1LA6NCM1 817 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 FAM196BA6NMK8 535 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 NMT2O60551 498 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 AKR1B1P15121 316 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 RCAN1P53805 252 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 SCRN1Q12765 414 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 RAB11FIP4Q86YS3 637 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 SENP2Q9HC62 589 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 CABP5Q9NP86 173 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 CHMP5Q9NZZ3 219 aa20.02■□□□□ 0.79
CCDC28B-202ENST00000421922 ASTN2O75129 1339 aaPredicted RBP20.01■□□□□ 0.79
CCDC28B-202ENST00000421922 CCDC196A0A1B0GTZ2 297 aa20.01■□□□□ 0.79
CCDC28B-202ENST00000421922 CDKL5O76039 1030 aa20.01■□□□□ 0.79
CCDC28B-202ENST00000421922 DDAH1O94760 285 aa20.01■□□□□ 0.79
CCDC28B-202ENST00000421922 LLPHQ9BRT6 129 aaKnown RBP20.01■□□□□ 0.79
CCDC28B-202ENST00000421922 DEFB129Q9H1M3 183 aa20.01■□□□□ 0.79
CCDC28B-202ENST00000421922 PITPNM2Q9BZ72 1349 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms