RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 GPT2Q8TD30 523 aa24.47■■□□□ 1.51
GPC1-202ENST00000420138 IL17RBQ9NRM6 502 aa24.47■■□□□ 1.51
GPC1-202ENST00000420138 TSPY2A6NKD2 308 aa24.46■■□□□ 1.51
GPC1-202ENST00000420138 FOSBP53539 338 aa24.46■■□□□ 1.51
GPC1-202ENST00000420138 TFAP4Q01664 338 aa24.46■■□□□ 1.51
GPC1-202ENST00000420138 FANCBQ8NB91 859 aa24.46■■□□□ 1.51
GPC1-202ENST00000420138 PHKBQ93100 1093 aa24.46■■□□□ 1.51
GPC1-202ENST00000420138 DDX49Q9Y6V7 483 aaKnown RBP24.46■■□□□ 1.51
GPC1-202ENST00000420138 FOCADQ5VW36 1801 aa24.45■■□□□ 1.51
GPC1-202ENST00000420138 CDKL5O76039 1030 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 IFNAR1P17181 557 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 RASA1P20936 1047 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 TROAPQ12815 778 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 RTN1Q16799 776 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 IARSP41252 1262 aaKnown RBP24.45■■□□□ 1.5
GPC1-202ENST00000420138 CDK8P49336 464 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 PICALMQ13492 652 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 MKNK2Q9HBH9 465 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 SERPINA10Q9UK55 444 aa24.45■■□□□ 1.5
GPC1-202ENST00000420138 FSD2A1L4K1 749 aa24.44■■□□□ 1.5
GPC1-202ENST00000420138 GOLGA6L3A6NEY3 463 aa24.44■■□□□ 1.5
GPC1-202ENST00000420138 CPLX2Q6PUV4 134 aaKnown RBP24.44■■□□□ 1.5
GPC1-202ENST00000420138 NBPF11Q86T75 865 aa24.44■■□□□ 1.5
GPC1-202ENST00000420138 ZSCAN16Q9H4T2 348 aaPredicted RBP24.44■■□□□ 1.5
GPC1-202ENST00000420138 GJB4Q9NTQ9 266 aa24.44■■□□□ 1.5
GPC1-202ENST00000420138 GADD45BO75293 160 aaPredicted RBP24.43■■□□□ 1.5
GPC1-202ENST00000420138 GUCY1B3Q02153 619 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 GABPAQ06546 454 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 NFIAQ12857 509 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 OTUD7BQ6GQQ9 843 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 FBXO18Q8NFZ0 1043 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 NUP133Q8WUM0 1156 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 ANKS1AQ92625 1134 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 AIFM3Q96NN9 605 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 STK36Q9NRP7 1315 aa24.43■■□□□ 1.5
GPC1-202ENST00000420138 UBE2Q2LH0YL09 131 aa24.42■■□□□ 1.5
GPC1-202ENST00000420138 NFKBIEO00221 500 aa24.42■■□□□ 1.5
GPC1-202ENST00000420138 RGS22Q8NE09 1264 aa24.42■■□□□ 1.5
GPC1-202ENST00000420138 OSBPL5Q9H0X9 879 aaPredicted RBP24.42■■□□□ 1.5
GPC1-202ENST00000420138 TCP11L1Q9NUJ3 509 aa24.42■■□□□ 1.5
GPC1-202ENST00000420138 FMNL1O95466 1100 aaPredicted RBP24.42■■□□□ 1.5
GPC1-202ENST00000420138 CATIPQ7Z7H3 387 aa24.42■■□□□ 1.5
GPC1-202ENST00000420138 NIM1KQ8IY84 436 aa24.42■■□□□ 1.5
GPC1-202ENST00000420138 C8orf76Q96K31 380 aa24.42■■□□□ 1.5
GPC1-202ENST00000420138 FIBPO43427 364 aa24.41■■□□□ 1.5
GPC1-202ENST00000420138 VIL1P09327 827 aaKnown RBP24.41■■□□□ 1.5
GPC1-202ENST00000420138 PPP2R5BQ15173 497 aa24.41■■□□□ 1.5
GPC1-202ENST00000420138 DGKHQ86XP1 1220 aa24.41■■□□□ 1.5
GPC1-202ENST00000420138 ZNF444Q8N0Y2 327 aaPredicted RBP24.41■■□□□ 1.5
GPC1-202ENST00000420138 GMLQ99445 158 aa24.41■■□□□ 1.5
GPC1-202ENST00000420138 CCDC196A0A1B0GTZ2 297 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 DDAH1O94760 285 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 NCLP19338 710 aaKnown RBP24.4■■□□□ 1.5
GPC1-202ENST00000420138 FUT2Q10981 343 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 RSBN1LQ6PCB5 846 aaPredicted RBP24.4■■□□□ 1.5
GPC1-202ENST00000420138 CMTR1Q8N1G2 835 aaKnown RBP24.4■■□□□ 1.5
GPC1-202ENST00000420138 CRACR2BQ8N4Y2 399 aaPredicted RBP24.4■■□□□ 1.5
GPC1-202ENST00000420138 ALG1Q9BT22 464 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 ZNF287Q9HBT7 754 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 ISY1Q9ULR0 285 aaKnown RBP24.4■■□□□ 1.5
GPC1-202ENST00000420138 PSMD14O00487 310 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 RAD17O75943 681 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 TTC6Q86TZ1 520 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 ZFPM1Q8IX07 1006 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 SLC26A6Q9BXS9 759 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 ZNRF3Q9ULT6 936 aa24.4■■□□□ 1.5
GPC1-202ENST00000420138 LTBP3Q9NS15 1303 aa24.39■■□□□ 1.49
GPC1-202ENST00000420138 ECM29Q5VYK3 1845 aa24.39■■□□□ 1.49
GPC1-202ENST00000420138 TSPY3P0CV98 308 aa24.39■■□□□ 1.49
GPC1-202ENST00000420138 TSPY8P0CW00 308 aa24.39■■□□□ 1.49
GPC1-202ENST00000420138 GUCY1A2P33402 732 aa24.39■■□□□ 1.49
GPC1-202ENST00000420138 KRT85P78386 507 aa24.39■■□□□ 1.49
GPC1-202ENST00000420138 SSRP1Q08945 709 aaKnown RBP24.39■■□□□ 1.49
GPC1-202ENST00000420138 SYT17Q9BSW7 474 aa24.39■■□□□ 1.49
GPC1-202ENST00000420138 IDI2Q9BXS1 227 aa24.39■■□□□ 1.49
GPC1-202ENST00000420138 CALM1P0DP23 149 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 CALM2P0DP24 149 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 CALM3P0DP25 149 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 CACNB3P54284 484 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 NEDD1Q8NHV4 660 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 JDP2Q8WYK2 163 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 FAM198AQ9UFP1 575 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 MYH1P12882 1939 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 MYO3BQ8WXR4 1341 aa24.38■■□□□ 1.49
GPC1-202ENST00000420138 RBM5P52756 815 aaKnown RBP eCLIP24.38■■□□□ 1.49
GPC1-202ENST00000420138 TFIP11Q9UBB9 837 aaKnown RBP24.38■■□□□ 1.49
GPC1-202ENST00000420138 RASSF7Q02833 373 aa24.37■■□□□ 1.49
GPC1-202ENST00000420138 CFAP100Q494V2 611 aa24.37■■□□□ 1.49
GPC1-202ENST00000420138 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.37■■□□□ 1.49
GPC1-202ENST00000420138 TCHHQ07283 1943 aa24.36■■□□□ 1.49
GPC1-202ENST00000420138 NPM3O75607 178 aaKnown RBP24.36■■□□□ 1.49
GPC1-202ENST00000420138 PLEKHA8P1O95397 391 aa24.36■■□□□ 1.49
GPC1-202ENST00000420138 MBD3O95983 291 aa24.36■■□□□ 1.49
GPC1-202ENST00000420138 NOVP48745 357 aa24.36■■□□□ 1.49
GPC1-202ENST00000420138 CCDC178Q5BJE1 867 aa24.36■■□□□ 1.49
GPC1-202ENST00000420138 CCDC82Q8N4S0 544 aa24.36■■□□□ 1.49
GPC1-202ENST00000420138 PRMT6Q96LA8 375 aaPredicted RBP24.36■■□□□ 1.49
GPC1-202ENST00000420138 RBM28Q9NW13 759 aaKnown RBP24.36■■□□□ 1.49
GPC1-202ENST00000420138 KRT40Q6A162 431 aa24.35■■□□□ 1.49
GPC1-202ENST00000420138 TMTC3Q6ZXV5 915 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms