RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 HSPA4P34932 840 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 DLK2Q6UY11 383 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 TBC1D10CQ8IV04 446 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 CDAN1Q8IWY9 1227 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 SLC44A5Q8NCS7 719 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 STAG1Q8WVM7 1258 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 TEPSINQ96N21 525 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 USP26Q9BXU7 913 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 PICK1Q9NRD5 415 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 ANAPC4Q9UJX5 808 aa10□□□□□ -0.81
TRIM48-201ENST00000417545 E7EWF7 191 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 TBC1D12O60347 775 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 GDF11O95390 407 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 SEC24BO95487 1268 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 NT5C2P49902 561 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 FKBP1BP68106 108 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 ATP2B2Q01814 1243 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 SART3Q15020 963 aaKnown RBP9.99□□□□□ -0.81
TRIM48-201ENST00000417545 RAB3GAP1Q15042 981 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 NECTIN1Q15223 517 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 ABCB5Q2M3G0 1257 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 PAXIP1Q6ZW49 1069 aaPredicted RBP9.99□□□□□ -0.81
TRIM48-201ENST00000417545 IQCA1Q86XH1 822 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 CCDC17Q96LX7 622 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 JAKMIP1Q96N16 626 aaKnown RBP9.99□□□□□ -0.81
TRIM48-201ENST00000417545 UBAC1Q9BSL1 405 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 ABT1Q9ULW3 272 aaKnown RBP9.99□□□□□ -0.81
TRIM48-201ENST00000417545 OTOFQ9HC10 1997 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 SSC5DA1L4H1 1573 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 NEDD4P46934 1319 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 B4E1Z4 1266 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 KDM4AO75164 1064 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 HMGB1P09429 215 aaKnown RBP9.99□□□□□ -0.81
TRIM48-201ENST00000417545 TFAP4Q01664 338 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 CCDC178Q5BJE1 867 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 PPP4R3BQ5MIZ7 849 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 BLOC1S2Q6QNY1 142 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 ANKRD13AQ8IZ07 590 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 SPDYE1Q8NFV5 336 aaPredicted RBP9.99□□□□□ -0.81
TRIM48-201ENST00000417545 NEK1Q96PY6 1258 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 AS3MTQ9HBK9 375 aa9.99□□□□□ -0.81
TRIM48-201ENST00000417545 ORC4O43929 436 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 RAD21O60216 631 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 ITGBL1O95965 494 aaPredicted RBP9.98□□□□□ -0.81
TRIM48-201ENST00000417545 ASNSP08243 561 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 CASTP20810 708 aaKnown RBP9.98□□□□□ -0.81
TRIM48-201ENST00000417545 RASA1P20936 1047 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 SHMT1P34896 483 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 HUNKP57058 714 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 ANAPC15P60006 121 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 MAP3K9P80192 1104 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 FMR1Q06787 632 aaKnown RBP eCLIP9.98□□□□□ -0.81
TRIM48-201ENST00000417545 FAM47AQ5JRC9 791 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 TMEM179Q6ZVK1 233 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 SCYL3Q8IZE3 742 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 FEZ1Q99689 392 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 ARHGEF10LQ9HCE6 1279 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 ISY1Q9ULR0 285 aaKnown RBP9.98□□□□□ -0.81
TRIM48-201ENST00000417545 FZD1Q9UP38 647 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 SNX14Q9Y5W7 946 aa9.98□□□□□ -0.81
TRIM48-201ENST00000417545 MYH4Q9Y623 1939 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 TMEM88BA6NKF7 163 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 UBE2Q2LH0YL09 131 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 PRC1O43663 620 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 CTNND1O60716 968 aaKnown RBP9.97□□□□□ -0.81
TRIM48-201ENST00000417545 USP2O75604 605 aaPredicted RBP9.97□□□□□ -0.81
TRIM48-201ENST00000417545 GH2P01242 217 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 SLURP2P0DP57 97 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 AKR1B1P15121 316 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 INPP5BP32019 993 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 MCM5P33992 734 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 CAP2P40123 477 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 ICA1Q05084 483 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 GABPAQ06546 454 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 TATDN1Q6P1N9 297 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 NFXL1Q6ZNB6 911 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 ZKSCAN4Q969J2 545 aaPredicted RBP9.97□□□□□ -0.81
TRIM48-201ENST00000417545 KLRG1Q96E93 195 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 SLC10A4Q96EP9 437 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 SH2D4AQ9H788 454 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 DNAJC18Q9H819 358 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 ELP3Q9H9T3 547 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 INCENPQ9NQS7 918 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 GINM1Q9NU53 330 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 ZBTB21Q9ULJ3 1066 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 NAP1L2Q9ULW6 460 aaPredicted RBP9.97□□□□□ -0.81
TRIM48-201ENST00000417545 STX8Q9UNK0 236 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.97□□□□□ -0.81
TRIM48-201ENST00000417545 CYP46A1Q9Y6A2 500 aa9.97□□□□□ -0.81
TRIM48-201ENST00000417545 USP17L5A8MUK1 530 aa9.96□□□□□ -0.82
TRIM48-201ENST00000417545 SMIM22K7EJ46 135 aa9.96□□□□□ -0.82
TRIM48-201ENST00000417545 IFIT3O14879 490 aaKnown RBP9.96□□□□□ -0.82
TRIM48-201ENST00000417545 GRM1Q13255 1194 aa9.96□□□□□ -0.82
TRIM48-201ENST00000417545 VGLL4Q14135 290 aa9.96□□□□□ -0.82
TRIM48-201ENST00000417545 MOB2Q70IA6 237 aa9.96□□□□□ -0.82
TRIM48-201ENST00000417545 METTL16Q86W50 562 aaKnown RBP9.96□□□□□ -0.82
TRIM48-201ENST00000417545 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.96□□□□□ -0.82
TRIM48-201ENST00000417545 ZKSCAN3Q9BRR0 538 aa9.96□□□□□ -0.82
TRIM48-201ENST00000417545 TBC1D2Q9BYX2 928 aa9.96□□□□□ -0.82
TRIM48-201ENST00000417545 NBPF3Q9H094 633 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms