RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 TMOD4Q9NZQ9 345 aa7.68□□□□□ -1.18
USP54-202ENST00000413442 ARPP21Q9UBL0 812 aaPredicted RBP7.68□□□□□ -1.18
USP54-202ENST00000413442 PALD1Q9ULE6 856 aa7.68□□□□□ -1.18
USP54-202ENST00000413442 SYNPO2Q9UMS6 1093 aa7.68□□□□□ -1.18
USP54-202ENST00000413442 FZD1Q9UP38 647 aa7.68□□□□□ -1.18
USP54-202ENST00000413442 AGTPBP1Q9UPW5 1226 aa7.68□□□□□ -1.18
USP54-202ENST00000413442 SUPT16HQ9Y5B9 1047 aaKnown RBP7.68□□□□□ -1.18
USP54-202ENST00000413442 PHIPQ8WWQ0 1821 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 ATAD5Q96QE3 1844 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 SLC3A2P08195 630 aaKnown RBP7.67□□□□□ -1.18
USP54-202ENST00000413442 RGS19P49795 217 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 DYNLL1P63167 89 aaKnown RBP7.67□□□□□ -1.18
USP54-202ENST00000413442 NUCB1Q02818 461 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 GABPAQ06546 454 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 MKRN3Q13064 507 aaKnown RBP7.67□□□□□ -1.18
USP54-202ENST00000413442 SPP2Q13103 211 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 CRHR2Q13324 411 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 C12orf60Q5U649 245 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 USP17L2Q6R6M4 530 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 MIGA1Q8NAN2 632 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 STRBPQ96SI9 672 aaKnown RBP7.67□□□□□ -1.18
USP54-202ENST00000413442 MCOLN1Q9GZU1 580 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 EFCC1Q9HA90 598 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 HELLSQ9NRZ9 838 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 MCM9Q9NXL9 1143 aa7.67□□□□□ -1.18
USP54-202ENST00000413442 PTPRFP10586 1907 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 PCNTO95613 3336 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 SMARCA5O60264 1052 aaPredicted RBP7.66□□□□□ -1.18
USP54-202ENST00000413442 PCP11498 1178 aaKnown RBP7.66□□□□□ -1.18
USP54-202ENST00000413442 PDE1AP54750 535 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 MOGSQ13724 837 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 ABCB5Q2M3G0 1257 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 GPAT2Q6NUI2 795 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 TMEM179Q6ZVK1 233 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 CHD1LQ86WJ1 897 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 FAM43AQ8N2R8 423 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 PI4K2BQ8TCG2 481 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 C12orf42Q96LP6 360 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 KIAA1683Q9H0B3 1180 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 KANSL2Q9H9L4 492 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 HOXC10Q9NYD6 342 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 SLC4A4Q9Y6R1 1079 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 SALL3Q9BXA9 1300 aa7.66□□□□□ -1.18
USP54-202ENST00000413442 USP17L12C9JPN9 530 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 USP17L21D6R901 530 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 BCRP11274 1271 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 MYH8P13535 1937 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 LACTBP83111 547 aaPredicted RBP7.65□□□□□ -1.18
USP54-202ENST00000413442 PDE4BQ07343 736 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 ALX1Q15699 326 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 FAM110CQ1W6H9 321 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 LBX2Q6XYB7 198 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 LPAR1Q92633 364 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 ARMT1Q9H993 441 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 ARHGEF10LQ9HCE6 1279 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 TSKSQ9UJT2 592 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 ZBTB21Q9ULJ3 1066 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 PTPN22Q9Y2R2 807 aa7.65□□□□□ -1.18
USP54-202ENST00000413442 MYPNQ86TC9 1320 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 TRIM75PA6NK02 468 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 GSG1L2A8MUP6 293 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L15C9J2P7 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L13C9JLJ4 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L11C9JVI0 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L18D6R9N7 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L22D6RA61 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L17D6RBQ6 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L19D6RCP7 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L20D6RJB6 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 MBD4O95243 580 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 FDX1P10109 184 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 PLCD1P51178 756 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 FCGRTP55899 365 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 USP17L24Q0WX57 530 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 IRF5Q13568 498 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 MCMDC2Q4G0Z9 681 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 ZMYM1Q5SVZ6 1142 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 CTR9Q6PD62 1173 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 GADL1Q6ZQY3 521 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 C16orf86Q6ZW13 317 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 OTOP1Q7RTM1 612 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 TRMT44Q8IYL2 757 aaKnown RBP7.64□□□□□ -1.19
USP54-202ENST00000413442 ZNF444Q8N0Y2 327 aaPredicted RBP7.64□□□□□ -1.19
USP54-202ENST00000413442 LCORLQ8N3X6 602 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 PXYLP1Q8TE99 480 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 SMCR8Q8TEV9 937 aaPredicted RBP7.64□□□□□ -1.19
USP54-202ENST00000413442 COA7Q96BR5 231 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 FSD1Q9BTV5 496 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 PUS7LQ9H0K6 701 aaKnown RBP7.64□□□□□ -1.19
USP54-202ENST00000413442 MKNK2Q9HBH9 465 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.64□□□□□ -1.19
USP54-202ENST00000413442 MORF4L1Q9UBU8 362 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 SAP30BPQ9UHR5 308 aaKnown RBP7.64□□□□□ -1.19
USP54-202ENST00000413442 TRIM17Q9Y577 477 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 NDUFB9Q9Y6M9 179 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 LOC285556D6RIA3 1793 aa7.64□□□□□ -1.19
USP54-202ENST00000413442 ADGRA2Q96PE1 1338 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 GPAA1O43292 621 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 STRNO43815 780 aa7.63□□□□□ -1.19
USP54-202ENST00000413442 GH2P01242 217 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms