RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 ANKRD13CQ8N6S4 541 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.92■□□□□ 0.46
CBX3-203ENST00000409747 COA7Q96BR5 231 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 NDUFB9Q9Y6M9 179 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 C19orf81C9J6K1 198 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 IRF5Q13568 498 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 MTMR2Q13614 643 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 ANTXR1Q9H6X2 564 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 ZBTB21Q9ULJ3 1066 aa17.92■□□□□ 0.46
CBX3-203ENST00000409747 FLT3LGP49771 235 aa17.91■□□□□ 0.46
CBX3-203ENST00000409747 MTFR1Q15390 333 aa17.91■□□□□ 0.46
CBX3-203ENST00000409747 TTC6Q86TZ1 520 aa17.91■□□□□ 0.46
CBX3-203ENST00000409747 PXYLP1Q8TE99 480 aa17.91■□□□□ 0.46
CBX3-203ENST00000409747 ASCC2Q9H1I8 757 aaPredicted RBP17.91■□□□□ 0.46
CBX3-203ENST00000409747 EHD4Q9H223 541 aa17.91■□□□□ 0.46
CBX3-203ENST00000409747 GABRQQ9UN88 632 aa17.91■□□□□ 0.46
CBX3-203ENST00000409747 USP17L10C9JJH3 530 aa17.9■□□□□ 0.46
CBX3-203ENST00000409747 APBB1O00213 710 aa17.9■□□□□ 0.46
CBX3-203ENST00000409747 ADCY3O60266 1144 aa17.9■□□□□ 0.46
CBX3-203ENST00000409747 GDF11O95390 407 aa17.9■□□□□ 0.46
CBX3-203ENST00000409747 CCL5P13501 91 aa17.9■□□□□ 0.46
CBX3-203ENST00000409747 IRX3P78415 501 aaPredicted RBP17.9■□□□□ 0.46
CBX3-203ENST00000409747 SERPINB13Q9UIV8 391 aa17.9■□□□□ 0.46
CBX3-203ENST00000409747 GJB1P08034 283 aa17.89■□□□□ 0.46
CBX3-203ENST00000409747 RNF208Q9H0X6 261 aa17.89■□□□□ 0.46
CBX3-203ENST00000409747 MAGEB6P1A0A0J9YX57 407 aa17.89■□□□□ 0.45
CBX3-203ENST00000409747 HOXA7P31268 230 aaPredicted RBP17.89■□□□□ 0.45
CBX3-203ENST00000409747 GJA8P48165 433 aa17.89■□□□□ 0.45
CBX3-203ENST00000409747 SLC9C2Q5TAH2 1124 aa17.89■□□□□ 0.45
CBX3-203ENST00000409747 NAV1Q8NEY1 1877 aa17.88■□□□□ 0.45
CBX3-203ENST00000409747 DDX60LQ5H9U9 1706 aaKnown RBP17.88■□□□□ 0.45
CBX3-203ENST00000409747 CAPN2P17655 700 aa17.88■□□□□ 0.45
CBX3-203ENST00000409747 PDE3AQ14432 1141 aa17.88■□□□□ 0.45
CBX3-203ENST00000409747 TATDN1Q6P1N9 297 aa17.88■□□□□ 0.45
CBX3-203ENST00000409747 SIRT2Q8IXJ6 389 aa17.88■□□□□ 0.45
CBX3-203ENST00000409747 DNAJC2Q99543 621 aaKnown RBP17.88■□□□□ 0.45
CBX3-203ENST00000409747 RIOK1Q9BRS2 568 aaKnown RBP17.88■□□□□ 0.45
CBX3-203ENST00000409747 CRNKL1Q9BZJ0 848 aaKnown RBP17.88■□□□□ 0.45
CBX3-203ENST00000409747 GOLIM4O00461 696 aa17.87■□□□□ 0.45
CBX3-203ENST00000409747 PDE6AP16499 860 aa17.87■□□□□ 0.45
CBX3-203ENST00000409747 JAG1P78504 1218 aa17.87■□□□□ 0.45
CBX3-203ENST00000409747 GTF3C2Q8WUA4 911 aaPredicted RBP17.87■□□□□ 0.45
CBX3-203ENST00000409747 SHISA4Q96DD7 197 aa17.87■□□□□ 0.45
CBX3-203ENST00000409747 MORF4L1Q9UBU8 362 aa17.87■□□□□ 0.45
CBX3-203ENST00000409747 GH2P01242 217 aa17.86■□□□□ 0.45
CBX3-203ENST00000409747 INHAP05111 366 aa17.86■□□□□ 0.45
CBX3-203ENST00000409747 USP17L2Q6R6M4 530 aa17.86■□□□□ 0.45
CBX3-203ENST00000409747 ELNP15502 786 aa17.86■□□□□ 0.45
CBX3-203ENST00000409747 FEZ1Q99689 392 aa17.86■□□□□ 0.45
CBX3-203ENST00000409747 TAOK2Q9UL54 1235 aa17.86■□□□□ 0.45
CBX3-203ENST00000409747 ZNF532Q9HCE3 1301 aa17.85■□□□□ 0.45
CBX3-203ENST00000409747 POLR3DP05423 398 aaPredicted RBP17.85■□□□□ 0.45
CBX3-203ENST00000409747 HERVK_113P62684 666 aa17.85■□□□□ 0.45
CBX3-203ENST00000409747 SHROOM1Q2M3G4 852 aaPredicted RBP17.85■□□□□ 0.45
CBX3-203ENST00000409747 CERKLQ49MI3 558 aaPredicted RBP17.85■□□□□ 0.45
CBX3-203ENST00000409747 U2AF1L4Q8WU68 220 aaKnown RBP17.85■□□□□ 0.45
CBX3-203ENST00000409747 UNC93B1Q9H1C4 597 aa17.85■□□□□ 0.45
CBX3-203ENST00000409747 CABP5Q9NP86 173 aa17.85■□□□□ 0.45
CBX3-203ENST00000409747 PAG1Q9NWQ8 432 aa17.85■□□□□ 0.45
CBX3-203ENST00000409747 USP14P54578 494 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 ABCB5Q2M3G0 1257 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 GPRC5AQ8NFJ5 357 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.84■□□□□ 0.45
CBX3-203ENST00000409747 BCL11AQ9H165 835 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 ATP5JP18859 108 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 RAB3GAP1Q15042 981 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 C12orf42Q96LP6 360 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 P2RX7Q99572 595 aaKnown RBP17.84■□□□□ 0.45
CBX3-203ENST00000409747 HTATIP2Q9BUP3 242 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 LRRCC1Q9C099 1032 aa17.84■□□□□ 0.45
CBX3-203ENST00000409747 TCRBV5S4A2TA0A5A2 114 aa17.83■□□□□ 0.44
CBX3-203ENST00000409747 SGPL1O95470 568 aa17.83■□□□□ 0.44
CBX3-203ENST00000409747 HMGCRP04035 888 aa17.83■□□□□ 0.44
CBX3-203ENST00000409747 SOCS4Q8WXH5 440 aa17.83■□□□□ 0.44
CBX3-203ENST00000409747 EMILIN3Q9NT22 766 aa17.83■□□□□ 0.44
CBX3-203ENST00000409747 MCM9Q9NXL9 1143 aa17.83■□□□□ 0.44
CBX3-203ENST00000409747 PLCD1P51178 756 aa17.82■□□□□ 0.44
CBX3-203ENST00000409747 CCAR1Q8IX12 1150 aaKnown RBP17.82■□□□□ 0.44
CBX3-203ENST00000409747 HAUS7Q99871 368 aa17.82■□□□□ 0.44
CBX3-203ENST00000409747 KIAA1683Q9H0B3 1180 aa17.82■□□□□ 0.44
CBX3-203ENST00000409747 BOLA2Q9H3K6 86 aa17.82■□□□□ 0.44
CBX3-203ENST00000409747 DOCK3Q8IZD9 2030 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 FARP2O94887 1054 aaPredicted RBP17.81■□□□□ 0.44
CBX3-203ENST00000409747 MAPK4P31152 587 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 SHMT1P34896 483 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 PAK6Q9NQU5 681 aaPredicted RBP17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L15C9J2P7 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L13C9JLJ4 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L11C9JVI0 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L18D6R9N7 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L22D6RA61 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L17D6RBQ6 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L19D6RCP7 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L20D6RJB6 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 ADD2P35612 726 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 ERVK-9P63128 1117 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 ERVK-24P63145 666 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 GABPAQ06546 454 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 USP17L24Q0WX57 530 aa17.81■□□□□ 0.44
CBX3-203ENST00000409747 ZYXQ15942 572 aaKnown RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms