RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 HYOU1Q9Y4L1 999 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 SNX21Q969T3 373 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 TRAF5O00463 557 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 SMC5Q8IY18 1101 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 TMX3Q96JJ7 454 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 EFCC1Q9HA90 598 aa8.7□□□□□ -1.02
SYNE1-210ENST00000409694 WDR97A6NE52 1622 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 PSDA5PKW4 1024 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-210ENST00000409694 KRT81Q14533 505 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 PRPSAP1Q14558 356 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 TUBB6Q9BUF5 446 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 MARCKSP29966 332 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-210ENST00000409694 GDPD2Q9HCC8 539 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 CYP7A1P22680 504 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 KPNA2P52292 529 aaKnown RBP8.69□□□□□ -1.02
SYNE1-210ENST00000409694 TRIM50Q86XT4 487 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 CCDC13Q8IYE1 715 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 DACT1Q9NYF0 836 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 NOD1Q9Y239 953 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 CC2D2AQ9P2K1 1620 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 HAND2P61296 217 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 RINT1Q6NUQ1 792 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 CDKL2Q92772 493 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 STK38LQ9Y2H1 464 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 NR1I2O75469 434 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 NUCB1Q02818 461 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 INTS4Q96HW7 963 aaKnown RBP8.69□□□□□ -1.02
SYNE1-210ENST00000409694 THAP12O43422 761 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 STAM2O75886 525 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 DNM2P50570 870 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 APBA1Q02410 837 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 IWS1Q96ST2 819 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 LZTS2Q9BRK4 669 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 MAD1L1Q9Y6D9 718 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 LMNAP02545 664 aaKnown RBP8.69□□□□□ -1.02
SYNE1-210ENST00000409694 KRT10P13645 584 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 RAD51AP2Q09MP3 1159 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 CCDC84Q86UT8 332 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-210ENST00000409694 VPS37BQ9H9H4 285 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 ARHGEF10LQ9HCE6 1279 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 MED4Q9NPJ6 270 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 SATB2Q9UPW6 733 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 PEX26Q7Z412 305 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 GPHNQ9NQX3 736 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-210ENST00000409694 RIPOR2Q9Y4F9 1068 aa8.69□□□□□ -1.02
SYNE1-210ENST00000409694 SART1O43290 800 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 ATF7P17544 494 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 BRD3Q15059 726 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 TYW5A2RUC4 315 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 N4BP1O75113 896 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 PNMA2Q9UL42 364 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 RPS6KA1Q15418 735 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 TTC1Q99614 292 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 POLR3CQ9BUI4 534 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 ANAPC5Q9UJX4 755 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 TRPC6Q9Y210 931 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 POLR2BP30876 1174 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 EEF1DP29692 281 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 PAK1Q13153 545 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 RPAINQ86UA6 219 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 MORC4Q8TE76 937 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 ANKRD2Q9GZV1 360 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 KDM3AQ9Y4C1 1321 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 NOP56O00567 594 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 IRX5P78411 483 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 PPP2R5CQ13362 524 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 SFMBT2Q5VUG0 894 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 SSH1Q8WYL5 1049 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 TXLNGQ9NUQ3 528 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 GNGT2O14610 69 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 PTCD1O75127 700 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 PRPF6O94906 941 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 KRT8P05787 483 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 CTNNA1P35221 906 aaKnown RBP8.68□□□□□ -1.02
SYNE1-210ENST00000409694 TRIM58Q8NG06 486 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 BAIAP2L1Q9UHR4 511 aa8.68□□□□□ -1.02
SYNE1-210ENST00000409694 STX1BP61266 288 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 LRRC23Q53EV4 343 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-210ENST00000409694 GOLGA5Q8TBA6 731 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 RAB20Q9NX57 234 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 SERPINI2O75830 405 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.67□□□□□ -1.02
SYNE1-210ENST00000409694 MPRIPQ6WCQ1 1025 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 UBE3BQ7Z3V4 1068 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 PICK1Q9NRD5 415 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 PAG1Q9NWQ8 432 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 AMFRQ9UKV5 643 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 CCNT1O60563 726 aaKnown RBP8.67□□□□□ -1.02
SYNE1-210ENST00000409694 TBC1D8BQ0IIM8 1120 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 KRT71Q3SY84 523 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 CCDC51Q96ER9 411 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 GDAP1L1Q96MZ0 367 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 SNAPC4Q5SXM2 1469 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 FBXO41Q8TF61 875 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 BRF1Q92994 677 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 SLC12A5Q9H2X9 1139 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 HDAC1Q13547 482 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-210ENST00000409694 HSP90AA4PQ58FG1 418 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 TRIM55Q9BYV6 548 aa8.67□□□□□ -1.02
SYNE1-210ENST00000409694 CCDC61Q9Y6R9 512 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms