RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FZD1Q9UP38 647 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 TAF6LQ9Y6J9 622 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 MYH1P12882 1939 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 PPP1R12BO60237 982 aaPredicted RBP15.8■□□□□ 0.12
LIMS1-204ENST00000409441 USP2O75604 605 aaPredicted RBP15.8■□□□□ 0.12
LIMS1-204ENST00000409441 MFSD6Q6ZSS7 791 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 TBC1D10CQ8IV04 446 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 RASEFQ8IZ41 740 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 TM6SF1Q9BZW5 370 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 DNAJC18Q9H819 358 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 MKNK2Q9HBH9 465 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 ZNF287Q9HBT7 754 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 TAOK2Q9UL54 1235 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 TACC3Q9Y6A5 838 aa15.8■□□□□ 0.12
LIMS1-204ENST00000409441 PRDM1O75626 825 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 CELF2O95319 508 aaKnown RBP15.79■□□□□ 0.12
LIMS1-204ENST00000409441 BAG4O95429 457 aaKnown RBP15.79■□□□□ 0.12
LIMS1-204ENST00000409441 FGRP09769 529 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 ZKSCAN1P17029 563 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-204ENST00000409441 SHMT1P34896 483 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 FSTL1Q12841 308 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 L1TD1Q5T7N2 865 aaKnown RBP15.79■□□□□ 0.12
LIMS1-204ENST00000409441 TATDN1Q6P1N9 297 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 ZNF341Q9BYN7 854 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 RNF41Q9H4P4 317 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-204ENST00000409441 NAV1Q8NEY1 1877 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 ROBO3Q96MS0 1386 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 PHF20L1A8MW92 1017 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 E7EWF7 191 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 TTLL12Q14166 644 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-204ENST00000409441 TSGA10IPQ3SY00 556 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 CST9Q5W186 159 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 ZNF444Q8N0Y2 327 aaPredicted RBP15.79■□□□□ 0.12
LIMS1-204ENST00000409441 STAG1Q8WVM7 1258 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 TTC14Q96N46 770 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 TOMM22Q9NS69 142 aa15.79■□□□□ 0.12
LIMS1-204ENST00000409441 PASKQ96RG2 1323 aa15.78■□□□□ 0.12
LIMS1-204ENST00000409441 PCP11498 1178 aaKnown RBP15.78■□□□□ 0.12
LIMS1-204ENST00000409441 RRP1BQ14684 758 aaKnown RBP15.78■□□□□ 0.12
LIMS1-204ENST00000409441 CERKLQ49MI3 558 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-204ENST00000409441 RRP12Q5JTH9 1297 aaKnown RBP15.78■□□□□ 0.12
LIMS1-204ENST00000409441 MOB2Q70IA6 237 aa15.78■□□□□ 0.12
LIMS1-204ENST00000409441 KLRG1Q96E93 195 aa15.78■□□□□ 0.12
LIMS1-204ENST00000409441 ZNF112Q9UJU3 913 aa15.78■□□□□ 0.12
LIMS1-204ENST00000409441 ISY1Q9ULR0 285 aaKnown RBP15.78■□□□□ 0.12
LIMS1-204ENST00000409441 ANGEL1Q9UNK9 670 aaKnown RBP15.78■□□□□ 0.12
LIMS1-204ENST00000409441 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.78■□□□□ 0.12
LIMS1-204ENST00000409441 SSC5DA1L4H1 1573 aa15.78■□□□□ 0.12
LIMS1-204ENST00000409441 DDX60LQ5H9U9 1706 aaKnown RBP15.77■□□□□ 0.12
LIMS1-204ENST00000409441 ORC4O43929 436 aa15.77■□□□□ 0.12
LIMS1-204ENST00000409441 STOX1Q6ZVD7 989 aa15.77■□□□□ 0.12
LIMS1-204ENST00000409441 C2orf69Q8N8R5 385 aa15.77■□□□□ 0.12
LIMS1-204ENST00000409441 UPF3BQ9BZI7 483 aaKnown RBP15.77■□□□□ 0.12
LIMS1-204ENST00000409441 RANBP6O60518 1105 aaKnown RBP15.76■□□□□ 0.11
LIMS1-204ENST00000409441 RASA1P20936 1047 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 IREB2P48200 963 aaKnown RBP15.76■□□□□ 0.11
LIMS1-204ENST00000409441 MAP3K9P80192 1104 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 TRDNQ13061 729 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 ARMC9Q7Z3E5 817 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 CCDC17Q96LX7 622 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 WRNIP1Q96S55 665 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 KRT23Q9C075 422 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 CNNM2Q9H8M5 875 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 GBA2Q9HCG7 927 aaPredicted RBP15.76■□□□□ 0.11
LIMS1-204ENST00000409441 NEDD4P46934 1319 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 B4E1Z4 1266 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 UBE2Q2LH0YL09 131 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 CTNND1O60716 968 aaKnown RBP15.76■□□□□ 0.11
LIMS1-204ENST00000409441 INPP5BP32019 993 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 CAP2P40123 477 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 FKBP1BP68106 108 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 TFAP4Q01664 338 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 KRT32Q14532 448 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 MAP3K11Q16584 847 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 ADCK5Q3MIX3 580 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 FAM47AQ5JRC9 791 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.76■□□□□ 0.11
LIMS1-204ENST00000409441 NCOA7Q8NI08 942 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 NKX2-3Q8TAU0 364 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 ESR2Q92731 530 aa15.76■□□□□ 0.11
LIMS1-204ENST00000409441 ZKSCAN4Q969J2 545 aaPredicted RBP15.76■□□□□ 0.11
LIMS1-204ENST00000409441 GDF11O95390 407 aa15.75■□□□□ 0.11
LIMS1-204ENST00000409441 AKR1B1P15121 316 aa15.75■□□□□ 0.11
LIMS1-204ENST00000409441 JAG1P78504 1218 aa15.75■□□□□ 0.11
LIMS1-204ENST00000409441 ABCB5Q2M3G0 1257 aa15.75■□□□□ 0.11
LIMS1-204ENST00000409441 NEK1Q96PY6 1258 aa15.75■□□□□ 0.11
LIMS1-204ENST00000409441 ZSWIM5Q9P217 1185 aa15.75■□□□□ 0.11
LIMS1-204ENST00000409441 FSD2A1L4K1 749 aa15.74■□□□□ 0.11
LIMS1-204ENST00000409441 MPHOSPH10O00566 681 aaKnown RBP15.74■□□□□ 0.11
LIMS1-204ENST00000409441 KDM4AO75164 1064 aa15.74■□□□□ 0.11
LIMS1-204ENST00000409441 SHROOM1Q2M3G4 852 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-204ENST00000409441 LDLRAD1Q5T700 205 aa15.74■□□□□ 0.11
LIMS1-204ENST00000409441 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-204ENST00000409441 RALYLQ86SE5 291 aaKnown RBP15.74■□□□□ 0.11
LIMS1-204ENST00000409441 ZSWIM6Q9HCJ5 1215 aa15.74■□□□□ 0.11
LIMS1-204ENST00000409441 CABP5Q9NP86 173 aa15.74■□□□□ 0.11
LIMS1-204ENST00000409441 LIMCH1Q9UPQ0 1083 aa15.74■□□□□ 0.11
LIMS1-204ENST00000409441 SIPA1L1O43166 1804 aa15.74■□□□□ 0.11
LIMS1-204ENST00000409441 TSPY2A6NKD2 308 aa15.73■□□□□ 0.11
LIMS1-204ENST00000409441 GH2P01242 217 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms