RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PDE4DQ08499 809 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 AOC3Q16853 763 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 DENND2CQ68D51 928 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 PPP1R21Q6ZMI0 780 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 CSGALNACT2Q8N6G5 542 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 PPP1R9BQ96SB3 815 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 KLHL14Q9P2G3 628 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 AGTPBP1Q9UPW5 1226 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.76□□□□□ -1.33
SCN1A-203ENST00000409050 FAM135BQ49AJ0 1406 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 CLNS1AP54105 237 aaKnown RBP6.76□□□□□ -1.33
SCN1A-203ENST00000409050 HAND2P61296 217 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 NBPF14Q5TI25 921 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 SFMBT2Q5VUG0 894 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 ADALQ6DHV7 355 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 NECAB1Q8N987 351 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 RGS22Q8NE09 1264 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 DRC3Q9H069 523 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 FAM8A1Q9UBU6 413 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 H7C1D1 291 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 PUM3Q15397 648 aaKnown RBP6.76□□□□□ -1.33
SCN1A-203ENST00000409050 C10orf76Q5T2E6 689 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 KRBA2Q6ZNG9 492 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 PLCD3Q8N3E9 789 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 MID2Q9UJV3 735 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 ABCC1P33527 1531 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 SGSM2O43147 1006 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 TRAPPC10P48553 1259 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 BPIFB4P59827 614 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 TTC38Q5R3I4 469 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 EXOC8Q8IYI6 725 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 VAT1LQ9HCJ6 419 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 RIC8AQ9NPQ8 531 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 CHPF2Q9P2E5 772 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 KIF21AQ7Z4S6 1674 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 SBNO1A3KN83 1393 aa6.76□□□□□ -1.33
SCN1A-203ENST00000409050 HIP1RO75146 1068 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 DEUP1Q05D60 604 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 MUM1L1Q5H9M0 696 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 COPS6Q7L5N1 327 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 SRRM1Q8IYB3 904 aaKnown RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 PPP4R1Q8TF05 950 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 RBM17Q96I25 401 aaKnown RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 LZTFL1Q9NQ48 299 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ATP8A2Q9NTI2 1148 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 AMFRQ9UKV5 643 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 MROH5Q6ZUA9 1318 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 A0A1W2PQ27 194 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 A0A1W2PQ64 194 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 A0A1W2PQD8 194 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 MARCKSP29966 332 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 RAPGEF1Q13905 1077 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 OR8K1Q8NGG5 319 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 KIFC2Q96AC6 838 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 PANK2Q9BZ23 570 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ZNF277Q9NRM2 450 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 MIS18AQ9NYP9 233 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 TRPC6Q9Y210 931 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 SAR1BQ9Y6B6 198 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 CCT6AP40227 531 aaKnown RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 KPNA2P52292 529 aaKnown RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ARHGAP4P98171 946 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 KBTBD3Q8NAB2 608 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 FAM96AQ9H5X1 160 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 CNOT10Q9H9A5 744 aaKnown RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 DNM3Q9UQ16 869 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 YTHDC2Q9H6S0 1430 aaKnown RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 TLDC2A0PJX2 215 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 RHOXF2BP0C7M4 288 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 KRT3P12035 628 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 CUL4BQ13620 913 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 WAPLQ7Z5K2 1190 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 RABGGTAQ92696 567 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 RHOXF2Q9BQY4 288 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ZC3H12CQ9C0D7 883 aaKnown RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 RBSNQ9H1K0 784 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 PCDHB13Q9Y5F0 798 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ARHGEF10O15013 1369 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 RNF123Q5XPI4 1314 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ATP2C2O75185 946 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 POSTNQ15063 836 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 HADHQ16836 314 aaKnown RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 GBP5Q96PP8 586 aa6.75□□□□□ -1.33
SCN1A-203ENST00000409050 METTL22Q9BUU2 404 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ACTR5Q9H9F9 607 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ZHX1Q9UKY1 873 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-203ENST00000409050 ARHGAP31Q2M1Z3 1444 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 PHLPP2Q6ZVD8 1323 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 ARHGEF35A5YM69 484 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 F8W8V4 182 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 IL2RBP14784 551 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 POLR2BP30876 1174 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 GARSP41250 739 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 ADCY7P51828 1080 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 TTLL12Q14166 644 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 SEPT2Q15019 361 aa6.74□□□□□ -1.33
SCN1A-203ENST00000409050 UTP14CQ5TAP6 766 aaKnown RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 SPINK5Q9NQ38 1064 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 ARPP21Q9UBL0 812 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-203ENST00000409050 NUTM2BA6NNL0 878 aaPredicted RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms