RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MPHOSPH10O00566 681 aaKnown RBP21.3■■□□□ 1
SDC1-203ENST00000403076 NT5C2P49902 561 aa21.3■■□□□ 1
SDC1-203ENST00000403076 COL9A3Q14050 684 aaPredicted RBP21.3■■□□□ 1
SDC1-203ENST00000403076 CERKLQ49MI3 558 aaPredicted RBP21.3■■□□□ 1
SDC1-203ENST00000403076 DLK2Q6UY11 383 aa21.3■■□□□ 1
SDC1-203ENST00000403076 CYB5R4Q7L1T6 521 aa21.3■■□□□ 1
SDC1-203ENST00000403076 ST18O60284 1047 aa21.29■■□□□ 1
SDC1-203ENST00000403076 NF2P35240 595 aa21.29■■□□□ 1
SDC1-203ENST00000403076 IQCA1Q86XH1 822 aa21.29■■□□□ 1
SDC1-203ENST00000403076 CCDC17Q96LX7 622 aa21.29■■□□□ 1
SDC1-203ENST00000403076 UBAC1Q9BSL1 405 aa21.29■■□□□ 1
SDC1-203ENST00000403076 LRRC2Q9BYS8 371 aa21.29■■□□□ 1
SDC1-203ENST00000403076 RBM19Q9Y4C8 960 aaKnown RBP21.29■■□□□ 1
SDC1-203ENST00000403076 EXOSC10Q01780 885 aaKnown RBP21.29■■□□□ 1
SDC1-203ENST00000403076 SART3Q15020 963 aaKnown RBP21.29■■□□□ 1
SDC1-203ENST00000403076 TATDN1Q6P1N9 297 aa21.29■■□□□ 1
SDC1-203ENST00000403076 NKX2-3Q8TAU0 364 aa21.29■■□□□ 1
SDC1-203ENST00000403076 CDCA5Q96FF9 252 aa21.29■■□□□ 1
SDC1-203ENST00000403076 ZKSCAN3Q9BRR0 538 aa21.29■■□□□ 1
SDC1-203ENST00000403076 SIPA1L1O43166 1804 aa21.28■■□□□ 1
SDC1-203ENST00000403076 ERICH2A1L162 156 aa21.28■■□□□ 1
SDC1-203ENST00000403076 IFIT3O14879 490 aaKnown RBP21.28■■□□□ 1
SDC1-203ENST00000403076 ANTXR2P58335 489 aa21.28■■□□□ 1
SDC1-203ENST00000403076 ZNF341Q9BYN7 854 aa21.28■■□□□ 1
SDC1-203ENST00000403076 CABP5Q9NP86 173 aa21.28■■□□□ 1
SDC1-203ENST00000403076 AKR1B1P15121 316 aa21.27■■□□□ 1
SDC1-203ENST00000403076 YY1P25490 414 aa21.27■■□□□ 1
SDC1-203ENST00000403076 MAP3K10Q02779 954 aa21.27■■□□□ 1
SDC1-203ENST00000403076 PRKG1Q13976 671 aa21.27■■□□□ 1
SDC1-203ENST00000403076 Q6ZUG5 572 aa21.27■■□□□ 1
SDC1-203ENST00000403076 IL27Q8NEV9 243 aa21.27■■□□□ 1
SDC1-203ENST00000403076 TMEM87BQ96K49 555 aa21.27■■□□□ 1
SDC1-203ENST00000403076 WDR19Q8NEZ3 1342 aa21.26■□□□□ 0.99
SDC1-203ENST00000403076 PPP1R12BO60237 982 aaPredicted RBP21.26■□□□□ 0.99
SDC1-203ENST00000403076 GDF11O95390 407 aa21.26■□□□□ 0.99
SDC1-203ENST00000403076 ANP32AP39687 249 aaKnown RBP21.26■□□□□ 0.99
SDC1-203ENST00000403076 ABCB5Q2M3G0 1257 aa21.26■□□□□ 0.99
SDC1-203ENST00000403076 CCDC178Q5BJE1 867 aa21.26■□□□□ 0.99
SDC1-203ENST00000403076 TMEM67Q5HYA8 995 aa21.26■□□□□ 0.99
SDC1-203ENST00000403076 CHADLQ6NUI6 762 aa21.26■□□□□ 0.99
SDC1-203ENST00000403076 NOL8Q76FK4 1167 aaKnown RBP21.26■□□□□ 0.99
SDC1-203ENST00000403076 NEDD1Q8NHV4 660 aa21.26■□□□□ 0.99
SDC1-203ENST00000403076 ZSCAN10Q96SZ4 725 aaPredicted RBP21.26■□□□□ 0.99
SDC1-203ENST00000403076 TTLL12Q14166 644 aaPredicted RBP21.25■□□□□ 0.99
SDC1-203ENST00000403076 TRAF5O00463 557 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 AK2P54819 239 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 ANKRD1Q15327 319 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 TTC14Q96N46 770 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 MTA3Q9BTC8 594 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 MYH8P13535 1937 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 TNKSO95271 1327 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 NMT2O60551 498 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 RRP1BQ14684 758 aaKnown RBP21.24■□□□□ 0.99
SDC1-203ENST00000403076 WTAPQ15007 396 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 NFXL1Q6ZNB6 911 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 BRF1Q92994 677 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 WRNIP1Q96S55 665 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 ALDH8A1Q9H2A2 487 aaPredicted RBP21.24■□□□□ 0.99
SDC1-203ENST00000403076 ZNF408Q9H9D4 720 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 GPHNQ9NQX3 736 aaPredicted RBP21.24■□□□□ 0.99
SDC1-203ENST00000403076 TCP11L1Q9NUJ3 509 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 FZD1Q9UP38 647 aa21.24■□□□□ 0.99
SDC1-203ENST00000403076 SH2B2O14492 632 aaPredicted RBP21.23■□□□□ 0.99
SDC1-203ENST00000403076 GH2P01242 217 aa21.23■□□□□ 0.99
SDC1-203ENST00000403076 CAP2P40123 477 aa21.23■□□□□ 0.99
SDC1-203ENST00000403076 TMEM179Q6ZVK1 233 aa21.23■□□□□ 0.99
SDC1-203ENST00000403076 IGDCC4Q8TDY8 1250 aa21.23■□□□□ 0.99
SDC1-203ENST00000403076 LARP6Q9BRS8 491 aaKnown RBP21.23■□□□□ 0.99
SDC1-203ENST00000403076 IL17RBQ9NRM6 502 aa21.23■□□□□ 0.99
SDC1-203ENST00000403076 NAP1L2Q9ULW6 460 aaPredicted RBP21.23■□□□□ 0.99
SDC1-203ENST00000403076 ANGEL1Q9UNK9 670 aaKnown RBP21.23■□□□□ 0.99
SDC1-203ENST00000403076 PHF20L1A8MW92 1017 aa21.22■□□□□ 0.99
SDC1-203ENST00000403076 CTNND1O60716 968 aaKnown RBP21.22■□□□□ 0.99
SDC1-203ENST00000403076 IREB2P48200 963 aaKnown RBP21.22■□□□□ 0.99
SDC1-203ENST00000403076 RAB3GAP1Q15042 981 aa21.22■□□□□ 0.99
SDC1-203ENST00000403076 TMTC2Q8N394 836 aa21.22■□□□□ 0.99
SDC1-203ENST00000403076 STX8Q9UNK0 236 aa21.22■□□□□ 0.99
SDC1-203ENST00000403076 SSC5DA1L4H1 1573 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 CCDC69A6NI79 296 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 USP2O75604 605 aaPredicted RBP21.21■□□□□ 0.99
SDC1-203ENST00000403076 INPP5BP32019 993 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 ATP2B2Q01814 1243 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 TOB2Q14106 344 aaPredicted RBP21.21■□□□□ 0.99
SDC1-203ENST00000403076 SEPT2Q15019 361 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 SHROOM1Q2M3G4 852 aaPredicted RBP21.21■□□□□ 0.99
SDC1-203ENST00000403076 PPP4R3BQ5MIZ7 849 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 IFIT1BQ5T764 474 aaKnown RBP21.21■□□□□ 0.99
SDC1-203ENST00000403076 HSCBQ8IWL3 235 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 ENAHQ8N8S7 591 aaPredicted RBP21.21■□□□□ 0.99
SDC1-203ENST00000403076 KLRG1Q96E93 195 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 CEP95Q96GE4 821 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 ZNF112Q9UJU3 913 aa21.21■□□□□ 0.99
SDC1-203ENST00000403076 PLIN4Q96Q06 1357 aa21.2■□□□□ 0.98
SDC1-203ENST00000403076 KIF3CO14782 793 aa21.2■□□□□ 0.98
SDC1-203ENST00000403076 MCM2P49736 904 aa21.2■□□□□ 0.98
SDC1-203ENST00000403076 FMR1Q06787 632 aaKnown RBP eCLIP21.2■□□□□ 0.98
SDC1-203ENST00000403076 APOBRQ0VD83 1088 aa21.2■□□□□ 0.98
SDC1-203ENST00000403076 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.2■□□□□ 0.98
SDC1-203ENST00000403076 KANSL2Q9H9L4 492 aa21.2■□□□□ 0.98
SDC1-203ENST00000403076 LY9Q9HBG7 655 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms