RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 CSRNP1Q96S65 589 aa13.74□□□□□ -0.21
SKA3-203ENST00000400018 UBAC1Q9BSL1 405 aa13.74□□□□□ -0.21
SKA3-203ENST00000400018 GDPD2Q9HCC8 539 aa13.74□□□□□ -0.21
SKA3-203ENST00000400018 SLF2Q8IX21 1173 aa13.73□□□□□ -0.21
SKA3-203ENST00000400018 ANGEL1Q9UNK9 670 aaKnown RBP13.73□□□□□ -0.21
SKA3-203ENST00000400018 EPB41L2O43491 1005 aaKnown RBP13.73□□□□□ -0.21
SKA3-203ENST00000400018 TSPY3P0CV98 308 aa13.73□□□□□ -0.21
SKA3-203ENST00000400018 TSPY8P0CW00 308 aa13.73□□□□□ -0.21
SKA3-203ENST00000400018 GUCY1A2P33402 732 aa13.73□□□□□ -0.21
SKA3-203ENST00000400018 WTAPQ15007 396 aa13.73□□□□□ -0.21
SKA3-203ENST00000400018 APOA5Q6Q788 366 aa13.73□□□□□ -0.21
SKA3-203ENST00000400018 NBPF11Q86T75 865 aa13.73□□□□□ -0.21
SKA3-203ENST00000400018 CRACR2BQ8N4Y2 399 aaPredicted RBP13.73□□□□□ -0.21
SKA3-203ENST00000400018 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.73□□□□□ -0.21
SKA3-203ENST00000400018 HACL1Q9UJ83 578 aa13.73□□□□□ -0.21
SKA3-203ENST00000400018 VPS37CA5D8V6 355 aaPredicted RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 CUL4AQ13619 759 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 ZYXQ15942 572 aaKnown RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 ANGEL2Q5VTE6 544 aaKnown RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 ESR2Q92731 530 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 CEP95Q96GE4 821 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 ZSCAN10Q96SZ4 725 aaPredicted RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 SMC3Q9UQE7 1217 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 DDX60LQ5H9U9 1706 aaKnown RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 NAV1Q8NEY1 1877 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 CNTNAP1P78357 1384 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 PLEKHA8P1O95397 391 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 TAL1P17542 331 aaPredicted RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 SHMT1P34896 483 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 DDIT3P35638 169 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 RCSD1Q6JBY9 416 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 ZNF444Q8N0Y2 327 aaPredicted RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 STAG2Q8N3U4 1231 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 GTF3C6Q969F1 213 aa13.72□□□□□ -0.21
SKA3-203ENST00000400018 FAM217BQ9NTX9 383 aaPredicted RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 ISY1Q9ULR0 285 aaKnown RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 POLR2AP24928 1970 aaKnown RBP13.72□□□□□ -0.21
SKA3-203ENST00000400018 PDE4BQ07343 736 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 RASA3Q14644 834 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 RAB3GAP1Q15042 981 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 SERPINB13Q9UIV8 391 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 ANAPC4Q9UJX5 808 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 HDAC9Q9UKV0 1011 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 SBF1O95248 1867 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 CCDC69A6NI79 296 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 TNIP1Q15025 636 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 SEC23AQ15436 765 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 KIF4BQ2VIQ3 1234 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 TNPO1Q92973 898 aaKnown RBP13.71□□□□□ -0.21
SKA3-203ENST00000400018 KRT23Q9C075 422 aa13.71□□□□□ -0.21
SKA3-203ENST00000400018 PTPDC1A2A3K4 754 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 SBK1Q52WX2 424 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 IFIT1BQ5T764 474 aaKnown RBP13.7□□□□□ -0.22
SKA3-203ENST00000400018 NBPF12Q5TAG4 269 aaPredicted RBP13.7□□□□□ -0.22
SKA3-203ENST00000400018 GLIS2Q9BZE0 524 aaPredicted RBP13.7□□□□□ -0.22
SKA3-203ENST00000400018 SUGT1Q9Y2Z0 365 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 SLC12A7Q9Y666 1083 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 FRMPD2Q68DX3 1309 aaPredicted RBP13.7□□□□□ -0.22
SKA3-203ENST00000400018 FDPSP14324 419 aaKnown RBP13.7□□□□□ -0.22
SKA3-203ENST00000400018 PLCG2P16885 1265 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 SYT1P21579 422 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 METAP2P50579 478 aaKnown RBP eCLIP13.7□□□□□ -0.22
SKA3-203ENST00000400018 C16orf86Q6ZW13 317 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 CDC37L1Q7L3B6 337 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 NSUN7Q8NE18 718 aaKnown RBP13.7□□□□□ -0.22
SKA3-203ENST00000400018 GGA3Q9NZ52 723 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 GOLGA8AA7E2F4 631 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 ADAMTS3O15072 1205 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 HMGB1P09429 215 aaKnown RBP13.7□□□□□ -0.22
SKA3-203ENST00000400018 SNAP25P60880 206 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 SEPT2Q15019 361 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 EAPPQ56P03 285 aaPredicted RBP13.7□□□□□ -0.22
SKA3-203ENST00000400018 USP17L2Q6R6M4 530 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 ZNF654Q8IZM8 581 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 SPICE1Q8N0Z3 855 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 AGBL3Q8NEM8 1001 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 AGXT2Q9BYV1 514 aa13.7□□□□□ -0.22
SKA3-203ENST00000400018 ARFGEF1Q9Y6D6 1849 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 ADM5C9JUS6 153 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 GABPAQ06546 454 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 SPDYE2Q495Y8 402 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 MOB2Q70IA6 237 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 NUP88Q99567 741 aaPredicted RBP13.69□□□□□ -0.22
SKA3-203ENST00000400018 RNF41Q9H4P4 317 aaPredicted RBP13.69□□□□□ -0.22
SKA3-203ENST00000400018 VAT1LQ9HCJ6 419 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 CLIP2Q9UDT6 1046 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 ZMYM6O95789 1325 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 ECM29Q5VYK3 1845 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 ZBTB43O43298 467 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 PFKFB2O60825 505 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 GIMAP6Q6P9H5 292 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 AMOTL1Q8IY63 956 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 GPRC5DQ9NZD1 345 aa13.69□□□□□ -0.22
SKA3-203ENST00000400018 ERICH2A1L162 156 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 TICAM2Q86XR7 235 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 FAM43AQ8N2R8 423 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 TMEM47Q9BQJ4 181 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 FTOQ9C0B1 505 aaKnown RBP eCLIP13.68□□□□□ -0.22
SKA3-203ENST00000400018 UBA5Q9GZZ9 404 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 CNNM2Q9H8M5 875 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms