RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TNNC1P63316 161 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 ZFYVE27Q5T4F4 411 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 RBM43Q6ZSC3 357 aaKnown RBP10.4□□□□□ -0.74
COL28A1-201ENST00000399429 HNRNPLLQ8WVV9 542 aaKnown RBP10.4□□□□□ -0.74
COL28A1-201ENST00000399429 RMND1Q9NWS8 449 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 STAT6P42226 847 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 TTF1Q15361 905 aaPredicted RBP10.4□□□□□ -0.74
COL28A1-201ENST00000399429 BEND3Q5T5X7 828 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 SPATA1Q5VX52 437 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 PARP9Q8IXQ6 854 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 ZNF274Q96GC6 653 aaPredicted RBP10.4□□□□□ -0.74
COL28A1-201ENST00000399429 PANX2Q96RD6 677 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 BPIFA3Q9BQP9 254 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 MYO1AQ9UBC5 1043 aa10.4□□□□□ -0.74
COL28A1-201ENST00000399429 EIF3HO15372 352 aaKnown RBP eCLIP10.4□□□□□ -0.75
COL28A1-201ENST00000399429 TRHP20396 242 aaPredicted RBP10.4□□□□□ -0.75
COL28A1-201ENST00000399429 EPHB4P54760 987 aa10.4□□□□□ -0.75
COL28A1-201ENST00000399429 PAK1Q13153 545 aa10.4□□□□□ -0.75
COL28A1-201ENST00000399429 ARHGEF25Q86VW2 580 aa10.4□□□□□ -0.75
COL28A1-201ENST00000399429 LINS1Q8NG48 757 aa10.4□□□□□ -0.75
COL28A1-201ENST00000399429 IFIH1Q9BYX4 1025 aaKnown RBP10.4□□□□□ -0.75
COL28A1-201ENST00000399429 MAN1B1Q9UKM7 699 aa10.4□□□□□ -0.75
COL28A1-201ENST00000399429 TAF6LQ9Y6J9 622 aa10.4□□□□□ -0.75
COL28A1-201ENST00000399429 ADCY9O60503 1353 aa10.4□□□□□ -0.75
COL28A1-201ENST00000399429 GCFC2P16383 781 aaKnown RBP10.39□□□□□ -0.75
COL28A1-201ENST00000399429 PLCD1P51178 756 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 USP14P54578 494 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 GNPTABQ3T906 1256 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 CFAP221Q4G0U5 840 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 TYW1BQ6NUM6 668 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 RSRC2Q7L4I2 434 aaKnown RBP10.39□□□□□ -0.75
COL28A1-201ENST00000399429 TBC1D1Q86TI0 1168 aaPredicted RBP10.39□□□□□ -0.75
COL28A1-201ENST00000399429 GPHNQ9NQX3 736 aaPredicted RBP10.39□□□□□ -0.75
COL28A1-201ENST00000399429 SWAP70Q9UH65 585 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 ANKRD62A6NC57 917 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 MAGEA1P43355 309 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 NLRP5P59047 1200 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 IRX1P78414 480 aaPredicted RBP10.39□□□□□ -0.75
COL28A1-201ENST00000399429 ZNF174Q15697 407 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 LMBR1LQ6UX01 489 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 RPUSD2Q8IZ73 545 aaKnown RBP10.39□□□□□ -0.75
COL28A1-201ENST00000399429 CCDC155Q8N6L0 562 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 IQUBQ8NA54 791 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 RAPGEF4Q8WZA2 1011 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 SUCLG2Q96I99 432 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 AIFM3Q96NN9 605 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 EYA1Q99502 592 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 TSGA10Q9BZW7 698 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 EPB41L5Q9HCM4 733 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 HPCAL4Q9UM19 191 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 VIRMAQ69YN4 1812 aaKnown RBP10.39□□□□□ -0.75
COL28A1-201ENST00000399429 ATP10DQ9P241 1426 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 BACH1O14867 736 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 RNF113AO15541 343 aaKnown RBP10.39□□□□□ -0.75
COL28A1-201ENST00000399429 CYP27A1Q02318 531 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 RTN1Q16799 776 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 RILPL1Q5EBL4 403 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 FAM167BQ9BTA0 163 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 EHD4Q9H223 541 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 MAP3K5Q99683 1374 aa10.39□□□□□ -0.75
COL28A1-201ENST00000399429 PTPROQ16827 1216 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 FAM133BQ5BKY9 247 aaKnown RBP10.38□□□□□ -0.75
COL28A1-201ENST00000399429 TC2NQ8N9U0 490 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 ENOX1Q8TC92 643 aaKnown RBP10.38□□□□□ -0.75
COL28A1-201ENST00000399429 ANKZF1Q9H8Y5 726 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 KCNK9Q9NPC2 374 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 MFAP3LO75121 409 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 NDUFA10O95299 355 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 KRT18P05783 430 aaKnown RBP10.38□□□□□ -0.75
COL28A1-201ENST00000399429 TNNI3KQ59H18 835 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 LRRC45Q96CN5 670 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 IFT74Q96LB3 600 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 ZKSCAN3Q9BRR0 538 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 ACTR5Q9H9F9 607 aaPredicted RBP10.38□□□□□ -0.75
COL28A1-201ENST00000399429 FPGT-TNNI3KV9GXZ4 949 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 MED14O60244 1454 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 ABCC10Q5T3U5 1492 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 B4E1Z4 1266 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 KCNJ18B7U540 433 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 BUB1O43683 1085 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 SEC24CP53992 1094 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 KCNJ12Q14500 433 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 CAPRIN2Q6IMN6 1127 aaKnown RBP10.38□□□□□ -0.75
COL28A1-201ENST00000399429 FAM114A1Q8IWE2 563 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 KBTBD3Q8NAB2 608 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 TRIM58Q8NG06 486 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 NELFBQ8WX92 580 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 SH3GL3Q99963 347 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 NLRP2Q9NX02 1062 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 IQSEC2Q5JU85 1478 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 GSTTP1A0A1W2PQM5 241 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 BTBD18B2RXH4 712 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 FOXN1O15353 648 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 KIAA0753Q2KHM9 967 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 RAD9BQ6WBX8 426 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 MMS19Q96T76 1030 aa10.38□□□□□ -0.75
COL28A1-201ENST00000399429 NOC4LQ9BVI4 516 aaKnown RBP10.38□□□□□ -0.75
COL28A1-201ENST00000399429 LRRD1A4D1F6 860 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 HIP1RO75146 1068 aa10.37□□□□□ -0.75
COL28A1-201ENST00000399429 SLC9C2Q5TAH2 1124 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms