RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 USP17L2Q6R6M4 530 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 RAD50Q92878 1312 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 MYCLP12524 364 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-205ENST00000392004 KIAA2012Q0VF49 1180 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 SEPT2Q15019 361 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 DLK2Q6UY11 383 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 PNMA1Q8ND90 353 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 NSUN4Q96CB9 384 aaKnown RBP11.86□□□□□ -0.51
COL6A3-205ENST00000392004 ZNF341Q9BYN7 854 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 LMBRD1Q9NUN5 540 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 ARPP21Q9UBL0 812 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-205ENST00000392004 HACL1Q9UJ83 578 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 SHTN1A0MZ66 631 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 MBD3O95983 291 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 UBXN2AP68543 259 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 SCLT1Q96NL6 688 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 PLIN2Q99541 437 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 DEFB129Q9H1M3 183 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 RBM27Q9P2N5 1060 aaKnown RBP11.86□□□□□ -0.51
COL6A3-205ENST00000392004 PI4KBQ9UBF8 816 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 IVNS1ABPQ9Y6Y0 642 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 CALM1P0DP23 149 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 CALM2P0DP24 149 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 CALM3P0DP25 149 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 MYOZ2Q9NPC6 264 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 KCNJ14Q9UNX9 436 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 UBE2Q2LH0YL09 131 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 SPATA32Q96LK8 384 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 SYCE3A1L190 88 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 IQCA1LA6NCM1 817 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 MARCKSP29966 332 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-205ENST00000392004 EEPD1Q7L9B9 569 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 LRP10Q7Z4F1 713 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 TMTC2Q8N394 836 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 DCP1AQ9NPI6 582 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-205ENST00000392004 ATP8A2Q9NTI2 1148 aa11.85□□□□□ -0.51
COL6A3-205ENST00000392004 YY1P25490 414 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 SLFN13Q68D06 897 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 FBXO33Q7Z6M2 555 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 CKAP2LQ8IYA6 745 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 GPKOWQ92917 476 aaPredicted RBP eCLIP11.84□□□□□ -0.51
COL6A3-205ENST00000392004 RRP36Q96EU6 259 aaKnown RBP11.84□□□□□ -0.51
COL6A3-205ENST00000392004 ELP3Q9H9T3 547 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 ZSWIM5Q9P217 1185 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 MON2Q7Z3U7 1717 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 ATP10DQ9P241 1426 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 RPS6KB1P23443 525 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 CDK8P49336 464 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 CAMK4Q16566 473 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 ISM2Q6H9L7 571 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 CDC42EP5Q6NZY7 148 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 LRSAM1Q6UWE0 723 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 NCAPG2Q86XI2 1143 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 C2orf69Q8N8R5 385 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 WASF1Q92558 559 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 GLIS2Q9BZE0 524 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-205ENST00000392004 BECN2A8MW95 431 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 DDX39AO00148 427 aaKnown RBP11.84□□□□□ -0.51
COL6A3-205ENST00000392004 CELF2O95319 508 aaKnown RBP11.84□□□□□ -0.51
COL6A3-205ENST00000392004 CALML3P27482 149 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 SH2B1Q9NRF2 756 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-205ENST00000392004 VPS54Q9P1Q0 977 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 GINS2Q9Y248 185 aa11.84□□□□□ -0.51
COL6A3-205ENST00000392004 CNGA1P29973 690 aa11.83□□□□□ -0.51
COL6A3-205ENST00000392004 PLCD1P51178 756 aa11.83□□□□□ -0.51
COL6A3-205ENST00000392004 KRT85P78386 507 aa11.83□□□□□ -0.51
COL6A3-205ENST00000392004 TDRD7Q8NHU6 1098 aaKnown RBP11.83□□□□□ -0.51
COL6A3-205ENST00000392004 WDR33Q9C0J8 1336 aaKnown RBP11.83□□□□□ -0.52
COL6A3-205ENST00000392004 HUNKP57058 714 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 ARMC9Q7Z3E5 817 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 ZKSCAN4Q969J2 545 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-205ENST00000392004 SPDYE3A6NKU9 549 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 ZNF654Q8IZM8 581 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 IL25Q9H293 177 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 TSPY26PQ9H489 355 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 MROH7-TTC4A0A0A0MT08 1334 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 CHMP2AO43633 222 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 EPHX2P34913 555 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 CHAMP1Q96JM3 812 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 ZSCAN10Q96SZ4 725 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-205ENST00000392004 DSCC1Q9BVC3 393 aa11.83□□□□□ -0.52
COL6A3-205ENST00000392004 KLRF2D3W0D1 207 aa11.82□□□□□ -0.52
COL6A3-205ENST00000392004 LETM2Q2VYF4 491 aa11.82□□□□□ -0.52
COL6A3-205ENST00000392004 SMAP1Q8IYB5 467 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-205ENST00000392004 ZNF396Q96N95 335 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-205ENST00000392004 SHPRHQ149N8 1683 aa11.82□□□□□ -0.52
COL6A3-205ENST00000392004 SH2D4AQ9H788 454 aa11.82□□□□□ -0.52
COL6A3-205ENST00000392004 ZNF70Q9UC06 446 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-205ENST00000392004 COL14A1Q05707 1796 aaKnown RBP11.82□□□□□ -0.52
COL6A3-205ENST00000392004 ADM5C9JUS6 153 aa11.82□□□□□ -0.52
COL6A3-205ENST00000392004 STX6O43752 255 aa11.82□□□□□ -0.52
COL6A3-205ENST00000392004 KINO60870 393 aaKnown RBP11.82□□□□□ -0.52
COL6A3-205ENST00000392004 TXLNAP40222 546 aa11.82□□□□□ -0.52
COL6A3-205ENST00000392004 IREB2P48200 963 aaKnown RBP11.82□□□□□ -0.52
COL6A3-205ENST00000392004 PDLIM2Q96JY6 352 aa11.82□□□□□ -0.52
COL6A3-205ENST00000392004 LSG1Q9H089 658 aaKnown RBP11.82□□□□□ -0.52
COL6A3-205ENST00000392004 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-205ENST00000392004 AOX1Q06278 1338 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 PDE4DIPQ5VU43 2346 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 SMIM22K7EJ46 135 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms