RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 ZBTB43O43298 467 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 KRT40Q6A162 431 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 CMTR1Q8N1G2 835 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 DHX58Q96C10 678 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 DESI2Q9BSY9 194 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 IRX2Q9BZI1 471 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 LRP2BPQ9P2M1 347 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 ABCF2Q9UG63 623 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 MYH14Q7Z406 1995 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 WDR19Q8NEZ3 1342 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 WDHD1O75717 1129 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 ADGRA1Q86SQ6 560 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 PDE11AQ9HCR9 933 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 POLR3EQ9NVU0 708 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 SLC4A4Q9Y6R1 1079 aa20.21■□□□□ 0.83
SQSTM1-202ENST00000389805 GYG1P46976 350 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 ANO1Q5XXA6 986 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 WWC2Q6AWC2 1192 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 VPS37DQ86XT2 251 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 COL4A1P02462 1669 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 N4BP1O75113 896 aaKnown RBP20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 TDO2P48775 406 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 MAP3K9P80192 1104 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 NTRK3Q16288 839 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 TOGARAM2Q6ZUX3 1019 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 BPIFA3Q9BQP9 254 aa20.2■□□□□ 0.82
SQSTM1-202ENST00000389805 GOLGA8AA7E2F4 631 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 ZSCAN12O43309 604 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 ACTN2P35609 894 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 EFCC1Q9HA90 598 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 SUGCTQ9HAC7 445 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 PUF60Q9UHX1 559 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 ADKP55263 362 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 PTF1AQ7RTS3 328 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 BRAPQ7Z569 592 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 KCNG4Q8TDN1 519 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 SDR42E1Q8WUS8 393 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 EXOC4Q96A65 974 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 MRFAP1Q9Y605 127 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 GUCY1A2P33402 732 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 SKIDA1Q1XH10 827 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 ERFEQ4G0M1 354 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 PARP10Q53GL7 1025 aa20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 AXDND1Q5T1B0 1012 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-202ENST00000389805 PHACTR2O75167 634 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 PFKFB1P16118 471 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 IARSP41252 1262 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 ALX1Q15699 326 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 AKNAD1Q5T1N1 836 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 LEKR1Q6ZMV7 388 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 RSRC2Q7L4I2 434 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 TMEM87BQ96K49 555 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 SLC26A6Q9BXS9 759 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 SLC12A7Q9Y666 1083 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 YEATS4O95619 227 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 GTF2A1P52655 376 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 MFSD6Q6ZSS7 791 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 CCDC12Q8WUD4 166 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 FANCLQ9NW38 375 aa20.18■□□□□ 0.82
SQSTM1-202ENST00000389805 A0A1W2PQ27 194 aa20.17■□□□□ 0.82
SQSTM1-202ENST00000389805 A0A1W2PQ64 194 aa20.17■□□□□ 0.82
SQSTM1-202ENST00000389805 A0A1W2PQD8 194 aa20.17■□□□□ 0.82
SQSTM1-202ENST00000389805 CCDC24Q8N4L8 307 aa20.17■□□□□ 0.82
SQSTM1-202ENST00000389805 PLEKHA4Q9H4M7 779 aa20.17■□□□□ 0.82
SQSTM1-202ENST00000389805 GOLGA1Q92805 767 aa20.17■□□□□ 0.82
SQSTM1-202ENST00000389805 MROH7-TTC4A0A0A0MT08 1334 aa20.17■□□□□ 0.82
SQSTM1-202ENST00000389805 PNOCQ13519 176 aa20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 AEBP2Q6ZN18 517 aaPredicted RBP20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 TMEM139Q8IV31 216 aa20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 CLIC6Q96NY7 704 aa20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 CDCA7Q9BWT1 371 aaPredicted RBP20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 MINDY4BA8MYZ0 360 aa20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 CYP7A1P22680 504 aa20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 SGMS1Q86VZ5 419 aa20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 VSTM4Q8IW00 320 aa20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 BAG1Q99933 345 aaPredicted RBP20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 RABGGTAQ92696 567 aa20.16■□□□□ 0.82
SQSTM1-202ENST00000389805 ARHGAP6O43182 974 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 TFRCP02786 760 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 CPLX2Q6PUV4 134 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 CDKL5O76039 1030 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 TXLNAP40222 546 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 PIP4K2BP78356 416 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 MYL5Q02045 173 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 SLC39A14Q15043 492 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 FAM98CQ17RN3 349 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 LINC00116Q8NCU8 138 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 RAI14Q9P0K7 980 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 KCNJ14Q9UNX9 436 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 FAN1Q9Y2M0 1017 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 C4AP0C0L4 1744 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 C4BP0C0L5 1744 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 SPATA31A5Q5VU36 1347 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 SPATA31A7Q8IWB4 1347 aa20.15■□□□□ 0.82
SQSTM1-202ENST00000389805 MTF1Q14872 753 aa20.14■□□□□ 0.82
SQSTM1-202ENST00000389805 LZTFL1Q9NQ48 299 aa20.14■□□□□ 0.82
SQSTM1-202ENST00000389805 THRAP3Q9Y2W1 955 aaKnown RBP20.14■□□□□ 0.82
SQSTM1-202ENST00000389805 LRP5O75197 1615 aa20.14■□□□□ 0.81
SQSTM1-202ENST00000389805 TAF1P21675 1872 aa20.14■□□□□ 0.81
SQSTM1-202ENST00000389805 CYP2D7A0A087X1C5 515 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms