RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 LRP10Q7Z4F1 713 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 HOMEZQ8IX15 550 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 CABS1Q96KC9 395 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 C8orf37Q96NL8 207 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 EHD4Q9H223 541 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 ZNF330Q9Y3S2 320 aaPredicted RBP16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 NDUFB9Q9Y6M9 179 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 KIF28PB7ZC32 967 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 AGPSO00116 658 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 USP14P54578 494 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 SETQ01105 290 aaPredicted RBP16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 FMR1Q06787 632 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 CCDC148Q8NFR7 591 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 BCAS4Q8TDM0 211 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 METTL22Q9BUU2 404 aaPredicted RBP16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 A1BGP04217 495 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 AMPD2Q01433 879 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 CPLX2Q6PUV4 134 aaKnown RBP16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 ABL1P00519 1130 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 PPFIA1Q13136 1202 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 LONRF3Q496Y0 759 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 MAP9Q49MG5 647 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 XAGE2Q96GT9 111 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 MYO6Q9UM54 1294 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 NBPF26B4DH59 902 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 AKAP17AQ02040 695 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 NBPF14Q5TI25 921 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 NCAPH2Q6IBW4 605 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 NBPF10Q6P3W6 841 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 NBPF15Q8N660 670 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 ENOX1Q8TC92 643 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 GJB4Q9NTQ9 266 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 CAPN7Q9Y6W3 813 aa16.6■□□□□ 0.25
VPS9D1-201ENST00000389386 EIF3HO15372 352 aaKnown RBP eCLIP16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 ATP5JP18859 108 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 SCP2P22307 547 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 RBL2Q08999 1139 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 TTLL7Q6ZT98 887 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 TTF2Q9UNY4 1162 aaKnown RBP16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 ADAMTS7Q9UKP4 1686 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 A0A087WZG4 1122 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 A0A1B0GTH6 734 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 SHTN1A0MZ66 631 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 GOLGA6CA6NDK9 693 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 GOLGA6DP0CG33 693 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 MCM3P25205 808 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 KIF23Q02241 960 aaPredicted RBP16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 CEP120Q8N960 986 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 GIMAP7Q8NHV1 300 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 GOLGA6AQ9NYA3 693 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 GRIN2DO15399 1336 aa16.59■□□□□ 0.25
VPS9D1-201ENST00000389386 RESP18Q5W5W9 173 aa16.58■□□□□ 0.25
VPS9D1-201ENST00000389386 CCDC102BQ68D86 513 aa16.58■□□□□ 0.25
VPS9D1-201ENST00000389386 CHST3Q7LGC8 479 aa16.58■□□□□ 0.25
VPS9D1-201ENST00000389386 CAPS2Q9BXY5 557 aa16.58■□□□□ 0.25
VPS9D1-201ENST00000389386 MCM8Q9UJA3 840 aa16.58■□□□□ 0.25
VPS9D1-201ENST00000389386 PCDH11XQ9BZA7 1347 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 PCDH11YQ9BZA8 1340 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 A0A0G2JS52 829 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 E7EWF7 191 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 MYO1FO00160 1098 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 TEX33O43247 280 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 MDM2Q00987 491 aaPredicted RBP16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 PPFIBP1Q86W92 1011 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 MED15Q96RN5 788 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 CRACR2AQ9BSW2 395 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 ZBTB3Q9H5J0 574 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 RABEP2Q9H5N1 569 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 SAMSN1Q9NSI8 373 aaKnown RBP16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 MYO1AQ9UBC5 1043 aa16.58■□□□□ 0.24
VPS9D1-201ENST00000389386 RFX7Q2KHR2 1363 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 ATXN2Q99700 1313 aaKnown RBP16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 PPP6R2O75170 966 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 FSBPO95073 299 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 HSPA1LP34931 641 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 ARHGAP25P42331 645 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 NEDD9Q14511 834 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 CPLX3Q8WVH0 158 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 MIEF2Q96C03 454 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 NGLY1Q96IV0 654 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 HOOK1Q9UJC3 728 aaKnown RBP16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 MAN1B1Q9UKM7 699 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 UTYO14607 1347 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 FOXN1O15353 648 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 ELF1P32519 619 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 AMOTL1Q8IY63 956 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 TRMT44Q8IYL2 757 aaKnown RBP16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 ACRBPQ8NEB7 543 aa16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 ZKSCAN4Q969J2 545 aaPredicted RBP16.57■□□□□ 0.24
VPS9D1-201ENST00000389386 COL22A1Q8NFW1 1626 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 A0A0G2JLW4 131 aa16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 PTPAQ15257 358 aa16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 GDAP1L1Q96MZ0 367 aa16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 SAMM50Q9Y512 469 aa16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 PPP1R12AO14974 1030 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 CHUKO15111 745 aa16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 GNGT1P63211 74 aa16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 APTXQ7Z2E3 356 aaKnown RBP16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 MLKLQ8NB16 471 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms