RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 VPS53Q5VIR6 699 aa16.01■□□□□ 0.15
VPS28-202ENST00000377348 ZNF589Q86UQ0 364 aaPredicted RBP16.01■□□□□ 0.15
VPS28-202ENST00000377348 KCNH4Q9UQ05 1017 aa16.01■□□□□ 0.15
VPS28-202ENST00000377348 AFG3L2Q9Y4W6 797 aa16.01■□□□□ 0.15
VPS28-202ENST00000377348 TRIM75PA6NK02 468 aa16■□□□□ 0.15
VPS28-202ENST00000377348 CA12O43570 354 aa16■□□□□ 0.15
VPS28-202ENST00000377348 TBC1D8O95759 1140 aa16■□□□□ 0.15
VPS28-202ENST00000377348 CETPP11597 493 aa16■□□□□ 0.15
VPS28-202ENST00000377348 INHBEP58166 350 aa16■□□□□ 0.15
VPS28-202ENST00000377348 CERKLQ49MI3 558 aaPredicted RBP16■□□□□ 0.15
VPS28-202ENST00000377348 MCMDC2Q4G0Z9 681 aa16■□□□□ 0.15
VPS28-202ENST00000377348 GIMAP6Q6P9H5 292 aa16■□□□□ 0.15
VPS28-202ENST00000377348 AMOTL1Q8IY63 956 aa16■□□□□ 0.15
VPS28-202ENST00000377348 IFNL3Q8IZI9 196 aa16■□□□□ 0.15
VPS28-202ENST00000377348 STK11IPQ8N1F8 1099 aa16■□□□□ 0.15
VPS28-202ENST00000377348 FAM43AQ8N2R8 423 aa16■□□□□ 0.15
VPS28-202ENST00000377348 ARPP21Q9UBL0 812 aaPredicted RBP16■□□□□ 0.15
VPS28-202ENST00000377348 ZBTB21Q9ULJ3 1066 aa16■□□□□ 0.15
VPS28-202ENST00000377348 ATAD5Q96QE3 1844 aa16■□□□□ 0.15
VPS28-202ENST00000377348 LAMB1P07942 1786 aa16■□□□□ 0.15
VPS28-202ENST00000377348 USP17L5A8MUK1 530 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 MINDY4BA8MYZ0 360 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 GH2P01242 217 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 ASNSP08243 561 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 CDK8P49336 464 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 MOGSQ13724 837 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 SBK1Q52WX2 424 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 CWC27Q6UX04 472 aaKnown RBP15.99■□□□□ 0.15
VPS28-202ENST00000377348 TICAM2Q86XR7 235 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 R3HDMLQ9H3Y0 253 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 DIAPH3Q9NSV4 1193 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 SAGE1Q9NXZ1 904 aa15.99■□□□□ 0.15
VPS28-202ENST00000377348 PHIPQ8WWQ0 1821 aa15.98■□□□□ 0.15
VPS28-202ENST00000377348 BTBD19C9JJ37 291 aa15.98■□□□□ 0.15
VPS28-202ENST00000377348 CXCL11O14625 94 aa15.98■□□□□ 0.15
VPS28-202ENST00000377348 SPP2Q13103 211 aa15.98■□□□□ 0.15
VPS28-202ENST00000377348 DGKZQ13574 1117 aa15.98■□□□□ 0.15
VPS28-202ENST00000377348 ABCB5Q2M3G0 1257 aa15.98■□□□□ 0.15
VPS28-202ENST00000377348 C16orf86Q6ZW13 317 aa15.98■□□□□ 0.15
VPS28-202ENST00000377348 SWAP70Q9UH65 585 aa15.98■□□□□ 0.15
VPS28-202ENST00000377348 CCDC171Q6TFL3 1326 aa15.97■□□□□ 0.15
VPS28-202ENST00000377348 A0A0G2JLL6 359 aaPredicted RBP15.97■□□□□ 0.15
VPS28-202ENST00000377348 MPHOSPH10O00566 681 aaKnown RBP15.97■□□□□ 0.15
VPS28-202ENST00000377348 RAB3GAP1Q15042 981 aa15.97■□□□□ 0.15
VPS28-202ENST00000377348 PRRT2Q7Z6L0 340 aaPredicted RBP15.97■□□□□ 0.15
VPS28-202ENST00000377348 ZNF280CQ8ND82 737 aa15.97■□□□□ 0.15
VPS28-202ENST00000377348 NACAP1Q9BZK3 213 aa15.97■□□□□ 0.15
VPS28-202ENST00000377348 NAPBQ9H115 298 aa15.97■□□□□ 0.15
VPS28-202ENST00000377348 IL25Q9H293 177 aa15.97■□□□□ 0.15
VPS28-202ENST00000377348 PPP4R2Q9NY27 417 aa15.97■□□□□ 0.15
VPS28-202ENST00000377348 HIP1O00291 1037 aa15.96■□□□□ 0.15
VPS28-202ENST00000377348 ALDH1A1P00352 501 aa15.96■□□□□ 0.15
VPS28-202ENST00000377348 AKR1B1P15121 316 aa15.96■□□□□ 0.15
VPS28-202ENST00000377348 GUCY1A2P33402 732 aa15.96■□□□□ 0.15
VPS28-202ENST00000377348 OTUD7BQ6GQQ9 843 aa15.96■□□□□ 0.15
VPS28-202ENST00000377348 GPAT2Q6NUI2 795 aa15.96■□□□□ 0.15
VPS28-202ENST00000377348 GADL1Q6ZQY3 521 aa15.96■□□□□ 0.15
VPS28-202ENST00000377348 CABP5Q9NP86 173 aa15.96■□□□□ 0.15
VPS28-202ENST00000377348 HSPD1P10809 573 aaKnown RBP15.95■□□□□ 0.14
VPS28-202ENST00000377348 HMGCS2P54868 508 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 PPARAQ07869 468 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 CRHR2Q13324 411 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 SEPT2Q15019 361 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 TAF1CQ15572 869 aaPredicted RBP15.95■□□□□ 0.14
VPS28-202ENST00000377348 ERICH6BQ5W0A0 696 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 CLEC10AQ8IUN9 316 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 WDR18Q9BV38 432 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 AS3MTQ9HBK9 375 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 GINM1Q9NU53 330 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 ROBO3Q96MS0 1386 aa15.95■□□□□ 0.14
VPS28-202ENST00000377348 PDHXO00330 501 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 PRDM1O75626 825 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 FGAP02671 866 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 CHMLP26374 656 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 CTDSPL2Q05D32 466 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 MTMR2Q13614 643 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 COL13A1Q5TAT6 717 aaPredicted RBP15.94■□□□□ 0.14
VPS28-202ENST00000377348 FASTKD5Q7L8L6 764 aaKnown RBP15.94■□□□□ 0.14
VPS28-202ENST00000377348 ANKRD23Q86SG2 305 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 ACER1Q8TDN7 264 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 CFHR5Q9BXR6 569 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 TBC1D2Q9BYX2 928 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 PRDM10Q9NQV6 1147 aa15.94■□□□□ 0.14
VPS28-202ENST00000377348 RASA1P20936 1047 aa15.93■□□□□ 0.14
VPS28-202ENST00000377348 BACE1P56817 501 aa15.93■□□□□ 0.14
VPS28-202ENST00000377348 ALX1Q15699 326 aa15.93■□□□□ 0.14
VPS28-202ENST00000377348 TREML2Q5T2D2 321 aa15.93■□□□□ 0.14
VPS28-202ENST00000377348 MKNK2Q9HBH9 465 aa15.93■□□□□ 0.14
VPS28-202ENST00000377348 INCENPQ9NQS7 918 aa15.93■□□□□ 0.14
VPS28-202ENST00000377348 TACC3Q9Y6A5 838 aa15.93■□□□□ 0.14
VPS28-202ENST00000377348 PTPRFP10586 1907 aa15.93■□□□□ 0.14
VPS28-202ENST00000377348 USP17L10C9JJH3 530 aa15.92■□□□□ 0.14
VPS28-202ENST00000377348 GPR25O00155 361 aa15.92■□□□□ 0.14
VPS28-202ENST00000377348 CYP2C8P10632 490 aa15.92■□□□□ 0.14
VPS28-202ENST00000377348 MFAP1P55081 439 aaKnown RBP15.92■□□□□ 0.14
VPS28-202ENST00000377348 ZYXQ15942 572 aaKnown RBP15.92■□□□□ 0.14
VPS28-202ENST00000377348 SH3D19Q5HYK7 790 aa15.92■□□□□ 0.14
VPS28-202ENST00000377348 TMEM179Q6ZVK1 233 aa15.92■□□□□ 0.14
VPS28-202ENST00000377348 ZNF296Q8WUU4 475 aaPredicted RBP15.92■□□□□ 0.14
VPS28-202ENST00000377348 CCDC17Q96LX7 622 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms