RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 OXER1Q8TDS5 423 aa28.98■■■□□ 2.23
C9orf40-201ENST00000376854 SMARCE1Q969G3 411 aa28.98■■■□□ 2.23
C9orf40-201ENST00000376854 CEP131Q9UPN4 1083 aa28.98■■■□□ 2.23
C9orf40-201ENST00000376854 ATP2B1P20020 1258 aa28.97■■■□□ 2.23
C9orf40-201ENST00000376854 CYP7A1P22680 504 aa28.97■■■□□ 2.23
C9orf40-201ENST00000376854 DNAI1Q9UI46 699 aa28.97■■■□□ 2.23
C9orf40-201ENST00000376854 SRPRBQ9Y5M8 271 aaKnown RBP28.97■■■□□ 2.23
C9orf40-201ENST00000376854 NPHP1O15259 732 aa28.97■■■□□ 2.23
C9orf40-201ENST00000376854 SARSP49591 514 aaKnown RBP28.97■■■□□ 2.23
C9orf40-201ENST00000376854 CDCA7Q9BWT1 371 aaPredicted RBP28.97■■■□□ 2.23
C9orf40-201ENST00000376854 DACH1Q9UI36 760 aa28.97■■■□□ 2.23
C9orf40-201ENST00000376854 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP28.97■■■□□ 2.23
C9orf40-201ENST00000376854 COL4A1P02462 1669 aa28.97■■■□□ 2.23
C9orf40-201ENST00000376854 PHLPP2Q6ZVD8 1323 aa28.97■■■□□ 2.23
C9orf40-201ENST00000376854 FMR1Q06787 632 aaKnown RBP eCLIP28.96■■■□□ 2.23
C9orf40-201ENST00000376854 CHRNDQ07001 517 aa28.96■■■□□ 2.23
C9orf40-201ENST00000376854 CABP5Q9NP86 173 aa28.96■■■□□ 2.23
C9orf40-201ENST00000376854 NFE2L3Q9Y4A8 694 aa28.96■■■□□ 2.23
C9orf40-201ENST00000376854 MINDY4BA8MYZ0 360 aa28.95■■■□□ 2.23
C9orf40-201ENST00000376854 MORC3Q14149 939 aa28.95■■■□□ 2.23
C9orf40-201ENST00000376854 PARP10Q53GL7 1025 aa28.95■■■□□ 2.23
C9orf40-201ENST00000376854 GRAMD1CQ8IYS0 662 aa28.95■■■□□ 2.23
C9orf40-201ENST00000376854 PDILTQ8N807 584 aa28.95■■■□□ 2.23
C9orf40-201ENST00000376854 ZNF827Q17R98 1081 aa28.95■■■□□ 2.22
C9orf40-201ENST00000376854 ADGRA1Q86SQ6 560 aa28.95■■■□□ 2.22
C9orf40-201ENST00000376854 FCHSD1Q86WN1 690 aa28.95■■■□□ 2.22
C9orf40-201ENST00000376854 LRRN4CLQ8ND94 238 aa28.95■■■□□ 2.22
C9orf40-201ENST00000376854 SDR42E1Q8WUS8 393 aa28.95■■■□□ 2.22
C9orf40-201ENST00000376854 IQSEC3Q9UPP2 1182 aaPredicted RBP28.95■■■□□ 2.22
C9orf40-201ENST00000376854 PHLPP1O60346 1717 aa28.95■■■□□ 2.22
C9orf40-201ENST00000376854 KCNQ2O43526 872 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 CDK11BP21127 795 aaKnown RBP28.94■■■□□ 2.22
C9orf40-201ENST00000376854 ERCC6LQ2NKX8 1250 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 TRIM65Q6PJ69 517 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 REXO1L1PQ8IX06 675 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 ENOX1Q8TC92 643 aaKnown RBP28.94■■■□□ 2.22
C9orf40-201ENST00000376854 TNKSO95271 1327 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 ZNF18P17022 549 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 KANK3Q6NY19 840 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 TMEM139Q8IV31 216 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 ESR2Q92731 530 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 CSRNP2Q9H175 543 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 BCORQ6W2J9 1755 aa28.94■■■□□ 2.22
C9orf40-201ENST00000376854 NUTM2BA6NNL0 878 aaPredicted RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 NUTM2EB1AL46 878 aaPredicted RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 ARHGAP6O43182 974 aa28.93■■■□□ 2.22
C9orf40-201ENST00000376854 ACTN4O43707 911 aaKnown RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 TBX2Q13207 712 aaPredicted RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 SEC23AQ15436 765 aa28.93■■■□□ 2.22
C9orf40-201ENST00000376854 NUTM2AQ8IVF1 878 aaPredicted RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 TRIML1Q8N9V2 468 aa28.93■■■□□ 2.22
C9orf40-201ENST00000376854 NOL10Q9BSC4 688 aaKnown RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 RNF26Q9BY78 433 aaPredicted RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 NRAPQ86VF7 1730 aa28.93■■■□□ 2.22
C9orf40-201ENST00000376854 ZSCAN12O43309 604 aa28.93■■■□□ 2.22
C9orf40-201ENST00000376854 AKAP17AQ02040 695 aaKnown RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 TRMT44Q8IYL2 757 aaKnown RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 ABCF2Q9UG63 623 aa28.93■■■□□ 2.22
C9orf40-201ENST00000376854 THRAP3Q9Y2W1 955 aaKnown RBP28.93■■■□□ 2.22
C9orf40-201ENST00000376854 RTL9Q8NET4 1388 aa28.92■■■□□ 2.22
C9orf40-201ENST00000376854 MAGEB6P1A0A0J9YX57 407 aa28.92■■■□□ 2.22
C9orf40-201ENST00000376854 USP49Q70CQ1 688 aa28.92■■■□□ 2.22
C9orf40-201ENST00000376854 WTIPA6NIX2 430 aaPredicted RBP28.92■■■□□ 2.22
C9orf40-201ENST00000376854 ANAPC4Q9UJX5 808 aa28.92■■■□□ 2.22
C9orf40-201ENST00000376854 ZHX1Q9UKY1 873 aaPredicted RBP28.92■■■□□ 2.22
C9orf40-201ENST00000376854 PPP2R5BQ15173 497 aa28.91■■■□□ 2.22
C9orf40-201ENST00000376854 RAI14Q9P0K7 980 aa28.91■■■□□ 2.22
C9orf40-201ENST00000376854 XBP1P17861 261 aa28.91■■■□□ 2.22
C9orf40-201ENST00000376854 SPECC1LQ69YQ0 1117 aa28.91■■■□□ 2.22
C9orf40-201ENST00000376854 KRT222Q8N1A0 295 aa28.91■■■□□ 2.22
C9orf40-201ENST00000376854 BAG1Q99933 345 aaPredicted RBP28.91■■■□□ 2.22
C9orf40-201ENST00000376854 SHISA4Q96DD7 197 aa28.9■■■□□ 2.22
C9orf40-201ENST00000376854 VPS54Q9P1Q0 977 aa28.9■■■□□ 2.22
C9orf40-201ENST00000376854 PPP2R2CQ9Y2T4 447 aa28.9■■■□□ 2.22
C9orf40-201ENST00000376854 RREB1Q92766 1687 aa28.9■■■□□ 2.22
C9orf40-201ENST00000376854 TRIM75PA6NK02 468 aa28.89■■■□□ 2.22
C9orf40-201ENST00000376854 SMIM22K7EJ46 135 aa28.89■■■□□ 2.22
C9orf40-201ENST00000376854 C3orf67Q6ZVT6 689 aa28.89■■■□□ 2.22
C9orf40-201ENST00000376854 SPATA31A5Q5VU36 1347 aa28.89■■■□□ 2.22
C9orf40-201ENST00000376854 SPATA31A7Q8IWB4 1347 aa28.89■■■□□ 2.22
C9orf40-201ENST00000376854 SPATA20Q8TB22 786 aa28.89■■■□□ 2.22
C9orf40-201ENST00000376854 FAM205CA6NFA0 338 aa28.88■■■□□ 2.21
C9orf40-201ENST00000376854 H2AFXP16104 143 aaPredicted RBP28.88■■■□□ 2.21
C9orf40-201ENST00000376854 PLCD1P51178 756 aa28.88■■■□□ 2.21
C9orf40-201ENST00000376854 KCNQ4P56696 695 aa28.88■■■□□ 2.21
C9orf40-201ENST00000376854 ENAHQ8N8S7 591 aaPredicted RBP28.88■■■□□ 2.21
C9orf40-201ENST00000376854 MED15Q96RN5 788 aa28.88■■■□□ 2.21
C9orf40-201ENST00000376854 ZSCAN10Q96SZ4 725 aaPredicted RBP28.88■■■□□ 2.21
C9orf40-201ENST00000376854 VWA3AA6NCI4 1184 aa28.88■■■□□ 2.21
C9orf40-201ENST00000376854 FANCGO15287 622 aa28.88■■■□□ 2.21
C9orf40-201ENST00000376854 PKN1Q16512 942 aa28.88■■■□□ 2.21
C9orf40-201ENST00000376854 DHX58Q96C10 678 aa28.88■■■□□ 2.21
C9orf40-201ENST00000376854 SAMSN1Q9NSI8 373 aaKnown RBP28.88■■■□□ 2.21
C9orf40-201ENST00000376854 AATFQ9NY61 560 aaKnown RBP eCLIP28.88■■■□□ 2.21
C9orf40-201ENST00000376854 BCL9LQ86UU0 1499 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 KRT2P35908 639 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 GYG1P46976 350 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 GABPB1Q06547 395 aaPredicted RBP28.87■■■□□ 2.21
C9orf40-201ENST00000376854 SMIM5Q71RC9 77 aa28.87■■■□□ 2.21
C9orf40-201ENST00000376854 TC2NQ8N9U0 490 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms