RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 NID2Q14112 1375 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 ZNF532Q9HCE3 1301 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 GUCY1A2P33402 732 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 RBL2Q08999 1139 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 TUBB2AQ13885 445 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 METTL24Q5JXM2 366 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 IGSF22Q8N9C0 903 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 TUBB2BQ9BVA1 445 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 SEC31BQ9NQW1 1179 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 KCNJ14Q9UNX9 436 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 SRPRBQ9Y5M8 271 aaKnown RBP24.07■■□□□ 1.44
UPF3A-202ENST00000375299 TCIRG1Q13488 830 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 HDXQ7Z353 690 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 ZNF512BQ96KM6 892 aaPredicted RBP24.07■■□□□ 1.44
UPF3A-202ENST00000375299 PLA2G12BQ9BX93 195 aa24.07■■□□□ 1.44
UPF3A-202ENST00000375299 VGLL3A8MV65 326 aa24.06■■□□□ 1.44
UPF3A-202ENST00000375299 IFIT3O14879 490 aaKnown RBP24.06■■□□□ 1.44
UPF3A-202ENST00000375299 IDH1O75874 414 aaKnown RBP24.06■■□□□ 1.44
UPF3A-202ENST00000375299 CSF1RP07333 972 aa24.06■■□□□ 1.44
UPF3A-202ENST00000375299 CT47A1Q5JQC4 288 aaPredicted RBP24.06■■□□□ 1.44
UPF3A-202ENST00000375299 PCDHB6Q9Y5E3 794 aa24.06■■□□□ 1.44
UPF3A-202ENST00000375299 A0A0U1RQJ8 604 aa24.06■■□□□ 1.44
UPF3A-202ENST00000375299 PBX1P40424 430 aa24.06■■□□□ 1.44
UPF3A-202ENST00000375299 RASGRP2Q7LDG7 609 aa24.06■■□□□ 1.44
UPF3A-202ENST00000375299 MSL3Q8N5Y2 521 aaKnown RBP24.06■■□□□ 1.44
UPF3A-202ENST00000375299 ATRIPQ8WXE1 791 aa24.06■■□□□ 1.44
UPF3A-202ENST00000375299 ERLIN1O75477 346 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 TUBB4BP68371 445 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 SPATA1Q5VX52 437 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 PNKPQ96T60 521 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 PDE11AQ9HCR9 933 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 INCENPQ9NQS7 918 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 CEP131Q9UPN4 1083 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 TNS2Q63HR2 1409 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 PCCAP05165 728 aaPredicted RBP24.05■■□□□ 1.44
UPF3A-202ENST00000375299 PDE6AP16499 860 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 ALX1Q15699 326 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 ZNF569Q5MCW4 686 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 BRINP3Q76B58 766 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 TRIM22Q8IYM9 498 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 IQUBQ8NA54 791 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 ZSWIM5Q9P217 1185 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 RIPOR2Q9Y4F9 1068 aa24.05■■□□□ 1.44
UPF3A-202ENST00000375299 COL5A2P05997 1499 aaPredicted RBP24.04■■□□□ 1.44
UPF3A-202ENST00000375299 SYNRGQ9UMZ2 1314 aa24.04■■□□□ 1.44
UPF3A-202ENST00000375299 MFAP3LO75121 409 aa24.04■■□□□ 1.44
UPF3A-202ENST00000375299 CPLX3Q8WVH0 158 aa24.04■■□□□ 1.44
UPF3A-202ENST00000375299 FAM89AQ96GI7 184 aa24.04■■□□□ 1.44
UPF3A-202ENST00000375299 ADD3Q9UEY8 706 aaKnown RBP24.04■■□□□ 1.44
UPF3A-202ENST00000375299 TBC1D2BQ9UPU7 963 aa24.04■■□□□ 1.44
UPF3A-202ENST00000375299 ACTN2P35609 894 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 MCM6Q14566 821 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 KIF4BQ2VIQ3 1234 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 STRBPQ96SI9 672 aaKnown RBP24.03■■□□□ 1.44
UPF3A-202ENST00000375299 TRIM34Q9BYJ4 488 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 CSRNP2Q9H175 543 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 TIAM2Q8IVF5 1701 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 EIF3JO75822 258 aaKnown RBP24.03■■□□□ 1.44
UPF3A-202ENST00000375299 IL2RBP14784 551 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 USP49Q70CQ1 688 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 AIDAQ96BJ3 306 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 VPS18Q9P253 973 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 WWC3Q9ULE0 1092 aa24.03■■□□□ 1.44
UPF3A-202ENST00000375299 TCRBV5S4A2TA0A5A2 114 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 CTAGE9A4FU28 777 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 NR5A1Q13285 461 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 RTN1Q16799 776 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 CDKAL1Q5VV42 579 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 CTAGE1Q96RT6 745 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 CTDSPL2Q05D32 466 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 TRIM28Q13263 835 aaKnown RBP24.02■■□□□ 1.44
UPF3A-202ENST00000375299 CUL4BQ13620 913 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 L1RE1Q9UN81 338 aa24.02■■□□□ 1.44
UPF3A-202ENST00000375299 TTF2Q9UNY4 1162 aaKnown RBP24.02■■□□□ 1.44
UPF3A-202ENST00000375299 SHANK3Q9BYB0 1731 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 DEXIO95424 95 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 CNGA4Q8IV77 575 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 SLC35F6Q8N357 371 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 CCDC51Q96ER9 411 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 CNNM2Q9H8M5 875 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 EPB41L4AQ9HCS5 686 aaPredicted RBP24.01■■□□□ 1.43
UPF3A-202ENST00000375299 ABCB6Q9NP58 842 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 MYH8P13535 1937 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 SEMA3EO15041 775 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 CD44P16070 742 aaKnown RBP24.01■■□□□ 1.43
UPF3A-202ENST00000375299 FECHP22830 423 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 STX17P56962 302 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 FILIP1LQ4L180 1135 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 KLHL10Q6JEL2 608 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 LDHAL6AQ6ZMR3 332 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 IFNL3Q8IZI9 196 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 NAPBQ9H115 298 aa24.01■■□□□ 1.43
UPF3A-202ENST00000375299 MYO1CO00159 1063 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 CASP14P31944 242 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 ZBTB38Q8NAP3 1195 aaPredicted RBP24■■□□□ 1.43
UPF3A-202ENST00000375299 CARD10Q9BWT7 1032 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 RASSF4Q9H2L5 321 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 STRN4Q9NRL3 753 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 TACC3Q9Y6A5 838 aa24■■□□□ 1.43
UPF3A-202ENST00000375299 PATL2C9JE40 543 aaKnown RBP24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms