RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 RGS22Q8NE09 1264 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 UBA5Q9GZZ9 404 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 EXOC7Q9UPT5 735 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 MRVI1Q9Y6F6 885 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 RPS6KA1Q15418 735 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 TERF2Q15554 542 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 FBXO41Q8TF61 875 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 DDX41Q9UJV9 622 aaKnown RBP11.32□□□□□ -0.6
PTCH1-204ENST00000375290 RRP15Q9Y3B9 282 aaKnown RBP11.32□□□□□ -0.6
PTCH1-204ENST00000375290 CTNNA1P35221 906 aaKnown RBP11.32□□□□□ -0.6
PTCH1-204ENST00000375290 BCAS4Q8TDM0 211 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 STAP2Q9UGK3 403 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 SPDYE3A6NKU9 549 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 CUL1Q13616 776 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 PPP2R2CQ9Y2T4 447 aa11.32□□□□□ -0.6
PTCH1-204ENST00000375290 GCKP35557 465 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 ATP2B2Q01814 1243 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 TRMT112Q9UI30 125 aaKnown RBP11.31□□□□□ -0.6
PTCH1-204ENST00000375290 SNX14Q9Y5W7 946 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 LAMC1P11047 1609 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 CETN3O15182 167 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 DHX58Q96C10 678 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 VIMP08670 466 aaKnown RBP11.31□□□□□ -0.6
PTCH1-204ENST00000375290 CUL4AQ13619 759 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 SLC27A2O14975 620 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 ZNF215Q9UL58 517 aaPredicted RBP11.31□□□□□ -0.6
PTCH1-204ENST00000375290 N4BP1O75113 896 aaKnown RBP11.31□□□□□ -0.6
PTCH1-204ENST00000375290 HVCN1Q96D96 273 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 PNMA2Q9UL42 364 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 UHRF1BP1LA0JNW5 1464 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 SUN1O94901 812 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 DRC3Q9H069 523 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 MIS12Q9H081 205 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 JRKLQ9Y4A0 524 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 PPP6R2O75170 966 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 PDLIM2Q96JY6 352 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 FOXP2O15409 715 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 KRT9P35527 623 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 RFX7Q2KHR2 1363 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 PPFIA2O75334 1257 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 MUM1Q2TAK8 710 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 CSGALNACT2Q8N6G5 542 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 NECAB1Q8N987 351 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 NUF2Q9BZD4 464 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 TXLNGQ9NUQ3 528 aa11.31□□□□□ -0.6
PTCH1-204ENST00000375290 PRPF6O94906 941 aaKnown RBP11.3□□□□□ -0.6
PTCH1-204ENST00000375290 MARCKSP29966 332 aaPredicted RBP11.3□□□□□ -0.6
PTCH1-204ENST00000375290 DTNBP1Q96EV8 351 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 KBTBD3Q8NAB2 608 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 AATKQ6ZMQ8 1374 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 E7EVH7 732 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 PTPRTO14522 1441 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 CABP5Q9NP86 173 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 RGS16O15492 202 aaPredicted RBP11.3□□□□□ -0.6
PTCH1-204ENST00000375290 HAUS8Q9BT25 410 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 DIS3Q9Y2L1 958 aaKnown RBP11.3□□□□□ -0.6
PTCH1-204ENST00000375290 CAPN7Q9Y6W3 813 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 BANK1Q8NDB2 785 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 SYNCQ9H7C4 482 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 A0A1W2PP64 1363 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 PPP1R21Q6ZMI0 780 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 DRC1Q96MC2 740 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 ZSWIM6Q9HCJ5 1215 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 STK10O94804 968 aaKnown RBP11.3□□□□□ -0.6
PTCH1-204ENST00000375290 KRT25Q7Z3Z0 450 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 APPBP2Q92624 585 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 ZKSCAN3Q9BRR0 538 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 BATF3Q9NR55 127 aa11.3□□□□□ -0.6
PTCH1-204ENST00000375290 PFKFB2O60825 505 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 TEKT1Q969V4 418 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 HNRNPCL1O60812 293 aaKnown RBP11.29□□□□□ -0.6
PTCH1-204ENST00000375290 NME9Q86XW9 330 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.29□□□□□ -0.6
PTCH1-204ENST00000375290 ATP7BP35670 1465 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 CHL1O00533 1208 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 NAPAP54920 295 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 PROSER2Q86WR7 435 aaPredicted RBP11.29□□□□□ -0.6
PTCH1-204ENST00000375290 VIPAS39Q9H9C1 493 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 MYSM1Q5VVJ2 828 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 VPS52Q8N1B4 723 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 CAPZA3Q96KX2 299 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 AK8Q96MA6 479 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 PANX2Q96RD6 677 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 THUMPD2Q9BTF0 503 aaKnown RBP11.29□□□□□ -0.6
PTCH1-204ENST00000375290 hCG_1984214I3L0E3 225 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 ZNF713Q8N859 430 aaPredicted RBP11.29□□□□□ -0.6
PTCH1-204ENST00000375290 SMTNP53814 917 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 SLC9C2Q5TAH2 1124 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 ARHGEF18Q6ZSZ5 1173 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 METTL14Q9HCE5 456 aaKnown RBP11.29□□□□□ -0.6
PTCH1-204ENST00000375290 TMOD4Q9NZQ9 345 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 SKIP12755 728 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 ARHGAP18Q8N392 663 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 ANKRD2Q9GZV1 360 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 MTMR7Q9Y216 660 aa11.29□□□□□ -0.6
PTCH1-204ENST00000375290 XPO4Q9C0E2 1151 aaKnown RBP11.28□□□□□ -0.6
PTCH1-204ENST00000375290 RTEL1Q9NZ71 1219 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 ZPR1O75312 459 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 FAM96AQ9H5X1 160 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 KCNK9Q9NPC2 374 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms