RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 GOLGA6L19H0YKK7 550 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 PRPF3O43395 683 aaKnown RBP10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 CHGBP05060 677 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 IL1R1P14778 569 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 CDC25BP30305 580 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 SARM1Q6SZW1 724 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 CYB5R4Q7L1T6 521 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 KRT27Q7Z3Y8 459 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 DZIP1Q86YF9 867 aaKnown RBP10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 TEX2Q8IWB9 1127 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 CCAR1Q8IX12 1150 aaKnown RBP10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 ENGASEQ8NFI3 743 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 MRIQ9BWK5 157 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 GTPBP4Q9BZE4 634 aaKnown RBP10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 SH3GLB2Q9NR46 395 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 ANKIB1Q9P2G1 1089 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 TFIP11Q9UBB9 837 aaKnown RBP10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 TCHHQ07283 1943 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 IRS2Q9Y4H2 1338 aa10.07□□□□□ -0.8
SNRNP40-202ENST00000373720 SMTNL1A8MU46 457 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 MMP1P03956 469 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 CALML3P27482 149 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 HOXA7P31268 230 aaPredicted RBP10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 GYG1P46976 350 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 MECOMQ03112 1051 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 NFIXQ14938 502 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 SEC23AQ15436 765 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 IFIT1BQ5T764 474 aaKnown RBP10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 KRT40Q6A162 431 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 NOSTRINQ8IVI9 506 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 SP8Q8IXZ3 490 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 CEP57L1Q8IYX8 460 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 ZNF654Q8IZM8 581 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 CTCFLQ8NI51 663 aaPredicted RBP10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 PGBD1Q96JS3 809 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 USP28Q96RU2 1077 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 QTRT2Q9H974 415 aaKnown RBP10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 NCOA5Q9HCD5 579 aaKnown RBP10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 NEDD4P46934 1319 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 FAM205AQ6ZU69 1335 aa10.06□□□□□ -0.8
SNRNP40-202ENST00000373720 MYH15Q9Y2K3 1946 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 CCDC88AQ3V6T2 1871 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 G3V3G9 751 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 hCG_1984214I3L0E3 225 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 SERPINB2P05120 415 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 PTMAP06454 111 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 PDE6BP35913 854 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 ZNF165P49910 485 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 FKBP1AP62942 108 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 ORC2Q13416 577 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 SNW1Q13573 536 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 FOXD4L6Q3SYB3 417 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 CTR9Q6PD62 1173 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 FOXD4L3Q6VB84 417 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 CHST3Q7LGC8 479 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 MICU3Q86XE3 530 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 FMR1NBQ8N0W7 255 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 ZNF713Q8N859 430 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 TRIML1Q8N9V2 468 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 FERMT2Q96AC1 680 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 SDF4Q9BRK5 362 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 COA1Q9GZY4 146 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 DCP1AQ9NPI6 582 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 TOMM22Q9NS69 142 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 FAM13BQ9NYF5 915 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 DACH1Q9UI36 760 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 GGA1Q9UJY5 639 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 PCDHA7Q9UN72 937 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 TNKSO95271 1327 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 MYO3BQ8WXR4 1341 aa10.05□□□□□ -0.8
SNRNP40-202ENST00000373720 CACNA1SQ13698 1873 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 CHD4Q14839 1912 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 NRDCO43847 1150 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 NR1I2O75469 434 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 TUBB4AP04350 444 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 GYS1P13807 737 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 PRKCSHP14314 528 aaPredicted RBP10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 LIG1P18858 919 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 SLFNL1Q499Z3 407 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 C12orf60Q5U649 245 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 PRR5LQ6MZQ0 368 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 BICDL1Q6ZP65 573 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 KRI1Q8N9T8 703 aaKnown RBP10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 FBXO41Q8TF61 875 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 CCDC12Q8WUD4 166 aaPredicted RBP10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 MRFAP1L1Q96HT8 127 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 HS3ST6Q96QI5 342 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 EYA3Q99504 573 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 FAM217BQ9NTX9 383 aaPredicted RBP10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 IQSEC3Q9UPP2 1182 aaPredicted RBP10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 C10orf71Q711Q0 1435 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 C4AP0C0L4 1744 aa10.04□□□□□ -0.8
SNRNP40-202ENST00000373720 GPR75-ASB3A0A0A6YYF3 556 aa10.03□□□□□ -0.8
SNRNP40-202ENST00000373720 BECN2A8MW95 431 aa10.03□□□□□ -0.8
SNRNP40-202ENST00000373720 MINDY4BA8MYZ0 360 aa10.03□□□□□ -0.8
SNRNP40-202ENST00000373720 LAD1O00515 517 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms