RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 NPATQ14207 1427 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 SLC9C1Q4G0N8 1177 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 KRT28Q7Z3Y7 464 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 GUCA1BQ9UMX6 200 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-209ENST00000367257 ACEP12821 1306 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 TPD52P55327 224 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-209ENST00000367257 PARP10Q53GL7 1025 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 PPP1R2P3Q6NXS1 205 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 KRT25Q7Z3Z0 450 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 ARMC2Q8NEN0 867 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 SAAL1Q96ER3 474 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 CABS1Q96KC9 395 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 IWS1Q96ST2 819 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 MEIS3Q99687 375 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 SPINK5Q9NQ38 1064 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-209ENST00000367257 IQSEC3Q9UPP2 1182 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-209ENST00000367257 NRXN1Q9ULB1 1477 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 LRRD1A4D1F6 860 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 C6orf229H3BNL8 230 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 RAD51AP2Q09MP3 1159 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 SLC9C2Q5TAH2 1124 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 PLEKHM2Q8IWE5 1019 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC63Q8NA47 563 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 JPH2Q9BR39 696 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-209ENST00000367257 STX8Q9UNK0 236 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 PCDHB15Q9Y5E8 787 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 UBR1Q8IWV7 1749 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 GOLGA6CA6NDK9 693 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 GOLGA6DP0CG33 693 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 LMOD1P29536 600 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-209ENST00000367257 SMTNP53814 917 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 SNCBQ16143 134 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC62Q6P9F0 684 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 MAK16Q9BXY0 300 aaKnown RBP9.91□□□□□ -0.82
SYNE1-209ENST00000367257 GOLGA6AQ9NYA3 693 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 FAN1Q9Y2M0 1017 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 GOLGA8KD6RF30 607 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 FLOT1O75955 427 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 ZNF75DP51815 510 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 ANO1Q5XXA6 986 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 CDAN1Q8IWY9 1227 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 IGSF22Q8N9C0 903 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 GBP5Q96PP8 586 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 MAGEF1Q9HAY2 307 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 TPX2Q9ULW0 747 aaKnown RBP9.91□□□□□ -0.82
SYNE1-209ENST00000367257 CETN3O15182 167 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 ASIC2Q16515 512 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 CFAP221Q4G0U5 840 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC144CPQ8IYA2 1237 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 TMEM87AQ8NBN3 555 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 ZBTB3Q9H5J0 574 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 CLTCQ00610 1675 aaKnown RBP9.91□□□□□ -0.82
SYNE1-209ENST00000367257 EEF2P13639 858 aaKnown RBP9.91□□□□□ -0.82
SYNE1-209ENST00000367257 ARMCX6Q7L4S7 300 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 WAPLQ7Z5K2 1190 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 NECAB1Q8N987 351 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 BBOF1Q8ND07 529 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 NOC4LQ9BVI4 516 aaKnown RBP9.91□□□□□ -0.82
SYNE1-209ENST00000367257 MED4Q9NPJ6 270 aa9.91□□□□□ -0.82
SYNE1-209ENST00000367257 TRPM1Q7Z4N2 1603 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 GOLGA8QA0A0J9YX86 632 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 GOLGA8OA6NCC3 632 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 GOLGA8NF8WBI6 632 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 TNFAIP3P21580 790 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 HAND2P61296 217 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 PAK1Q13153 545 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 VPS52Q8N1B4 723 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 ZNF513Q8N8E2 541 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-209ENST00000367257 ZCRB1Q8TBF4 217 aaKnown RBP9.9□□□□□ -0.82
SYNE1-209ENST00000367257 DCAF5Q96JK2 942 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 A0A1B0GVL5 298 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 VAMP4O75379 141 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 IDI1Q13907 227 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC85AQ96PX6 553 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-209ENST00000367257 VCX3AQ9NNX9 186 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 TMEM51Q9NW97 253 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 ZRANB1Q9UGI0 708 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 PRDM4Q9UKN5 801 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 SYNRGQ9UMZ2 1314 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 MYO3AQ8NEV4 1616 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 IBTKQ9P2D0 1353 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-209ENST00000367257 CREB3O43889 395 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 PARP1P09874 1014 aaKnown RBP9.9□□□□□ -0.82
SYNE1-209ENST00000367257 RANBP1P43487 201 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 TBC1D8BQ0IIM8 1120 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 APOBRQ0VD83 1088 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 PDCD2Q16342 344 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC117Q8IWD4 279 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-209ENST00000367257 XAGE3Q8WTP9 111 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 MIS12Q9H081 205 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 FAM204AQ9H8W3 233 aa9.9□□□□□ -0.82
SYNE1-209ENST00000367257 IQGAP1P46940 1657 aa9.9□□□□□ -0.83
SYNE1-209ENST00000367257 A2MP01023 1474 aa9.9□□□□□ -0.83
SYNE1-209ENST00000367257 KIAA0232Q92628 1395 aa9.9□□□□□ -0.83
SYNE1-209ENST00000367257 GALNT17Q6IS24 598 aa9.9□□□□□ -0.83
SYNE1-209ENST00000367257 C17orf53Q8N3J3 647 aaPredicted RBP9.9□□□□□ -0.83
SYNE1-209ENST00000367257 SMC1BQ8NDV3 1235 aa9.9□□□□□ -0.83
SYNE1-209ENST00000367257 GRK7Q8WTQ7 553 aa9.9□□□□□ -0.83
SYNE1-209ENST00000367257 CHPF2Q9P2E5 772 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms