RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 PDRG1Q9NUG6 133 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 LAMB1P07942 1786 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 KDM4AO75164 1064 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 MMP14P50281 582 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 CRNKL1Q9BZJ0 848 aaKnown RBP11.68□□□□□ -0.54
SYNE1-203ENST00000354674 NAPBQ9H115 298 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 NFKBIEO00221 500 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 BAG3O95817 575 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 AK2P54819 239 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 HHIPL2Q6UWX4 724 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 SDR42E1Q8WUS8 393 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 MXD3Q9BW11 206 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 AGXT2Q9BYV1 514 aa11.68□□□□□ -0.54
SYNE1-203ENST00000354674 ZNF277Q9NRM2 450 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-203ENST00000354674 PPP1R1BQ9UD71 204 aaPredicted RBP11.68□□□□□ -0.54
SYNE1-203ENST00000354674 IARSP41252 1262 aaKnown RBP11.67□□□□□ -0.54
SYNE1-203ENST00000354674 HDLBPQ00341 1268 aaKnown RBP11.67□□□□□ -0.54
SYNE1-203ENST00000354674 CAMK4Q16566 473 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 TBC1D10CQ8IV04 446 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 EFCC1Q9HA90 598 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 DCP1AQ9NPI6 582 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-203ENST00000354674 WDR19Q8NEZ3 1342 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 USP27XA6NNY8 438 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 GOLGA6L6A8MZA4 724 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 FIBPO43427 364 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 RHBDL3P58872 404 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 CUL4AQ13619 759 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 ARID5BQ14865 1188 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 ERCC6LQ2NKX8 1250 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 SBK1Q52WX2 424 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 DHX32Q7L7V1 743 aaKnown RBP11.67□□□□□ -0.54
SYNE1-203ENST00000354674 LRRN4CLQ8ND94 238 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 CCDC34Q96HJ3 373 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 DAGLAQ9Y4D2 1042 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 TACC3Q9Y6A5 838 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 GOLGB1Q14789 3259 aaKnown RBP11.67□□□□□ -0.54
SYNE1-203ENST00000354674 BTDP43251 543 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 HAND2P61296 217 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 TOB2Q14106 344 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-203ENST00000354674 MB21D2Q8IYB1 491 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-203ENST00000354674 SH3RF3Q8TEJ3 882 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-203ENST00000354674 STAG1Q8WVM7 1258 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 SMARCE1Q969G3 411 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 TMX3Q96JJ7 454 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 TAOK3Q9H2K8 898 aa11.67□□□□□ -0.54
SYNE1-203ENST00000354674 ADAMTSL1Q8N6G6 1762 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 MBD3O95983 291 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 VIL1P09327 827 aaKnown RBP11.66□□□□□ -0.54
SYNE1-203ENST00000354674 FGRP09769 529 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 PLCG2P16885 1265 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 TDO2P48775 406 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 CTR9Q6PD62 1173 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 LARGE2Q8N3Y3 721 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 ZNF397Q8NF99 534 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-203ENST00000354674 TSPYL1Q9H0U9 437 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 PLEKHA4Q9H4M7 779 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 TTF2Q9UNY4 1162 aaKnown RBP11.66□□□□□ -0.54
SYNE1-203ENST00000354674 CASQ1P31415 396 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 SYAP1Q96A49 352 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-203ENST00000354674 GMLQ99445 158 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 EPC1Q9H2F5 836 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 ZNRF3Q9ULT6 936 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 LIMCH1Q9UPQ0 1083 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 BCS1LQ9Y276 419 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 NAV1Q8NEY1 1877 aa11.66□□□□□ -0.54
SYNE1-203ENST00000354674 BAZ2AQ9UIF9 1905 aaKnown RBP11.66□□□□□ -0.54
SYNE1-203ENST00000354674 PPARAQ07869 468 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 ANKRD1Q15327 319 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 NCOA7Q8NI08 942 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 FBXW7Q969H0 707 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-203ENST00000354674 CNPY2Q9Y2B0 182 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 JRKLQ9Y4A0 524 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 ECM29Q5VYK3 1845 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 MYO3BQ8WXR4 1341 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 SMTNL1A8MU46 457 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 SEC31AO94979 1220 aaKnown RBP11.65□□□□□ -0.54
SYNE1-203ENST00000354674 AKNAD1Q5T1N1 836 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 CEP135Q66GS9 1140 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 CLEC17AQ6ZS10 378 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 LUZP1Q86V48 1076 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 ZDHHC15Q96MV8 337 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 FHDC1Q9C0D6 1143 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-203ENST00000354674 SERPINA10Q9UK55 444 aa11.65□□□□□ -0.54
SYNE1-203ENST00000354674 BMS1Q14692 1282 aaKnown RBP11.65□□□□□ -0.55
SYNE1-203ENST00000354674 ZSCAN26Q16670 478 aa11.65□□□□□ -0.55
SYNE1-203ENST00000354674 APOBEC3HQ6NTF7 200 aaKnown RBP11.65□□□□□ -0.55
SYNE1-203ENST00000354674 NCAPGQ9BPX3 1015 aa11.65□□□□□ -0.55
SYNE1-203ENST00000354674 ARPP21Q9UBL0 812 aaPredicted RBP11.65□□□□□ -0.55
SYNE1-203ENST00000354674 ROBO3Q96MS0 1386 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 NEDD4P46934 1319 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 PCP11498 1178 aaKnown RBP11.64□□□□□ -0.55
SYNE1-203ENST00000354674 ANTXR2P58335 489 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 CTDSPL2Q05D32 466 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 RSBN1LQ6PCB5 846 aaPredicted RBP11.64□□□□□ -0.55
SYNE1-203ENST00000354674 NIM1KQ8IY84 436 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 NKX2-3Q8TAU0 364 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 TEKT1Q969V4 418 aa11.64□□□□□ -0.55
SYNE1-203ENST00000354674 ZSCAN31Q96LW9 406 aaPredicted RBP11.64□□□□□ -0.55
SYNE1-203ENST00000354674 CRKP46108 304 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms