RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TMC6Q7Z403 805 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 IQCA1Q86XH1 822 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 NLRP3Q96P20 1036 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 SETDB2Q96T68 719 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 NYXQ9GZU5 481 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 PCDHA5Q9Y5H7 936 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 ATP2B1P20020 1258 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 CABP5Q9NP86 173 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 NARFQ9UHQ1 456 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 ATP1A3P13637 1013 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 CATIPQ7Z7H3 387 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 NBPF5PQ86XG9 351 aaPredicted RBP25.02■■□□□ 1.6
SHMT1-202ENST00000352886 TFCP2L1Q9NZI6 479 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 DLEC1Q9Y238 1755 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 USP17L12C9JPN9 530 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 USP17L21D6R901 530 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 RGL2O15211 777 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 FOXN1O15353 648 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 FANCCQ00597 558 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 MYL5Q02045 173 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 MECOMQ03112 1051 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 CCDC24Q8N4L8 307 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 SHISA4Q96DD7 197 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 VPS54Q9P1Q0 977 aa25.02■■□□□ 1.6
SHMT1-202ENST00000352886 FGRP09769 529 aa25.01■■□□□ 1.59
SHMT1-202ENST00000352886 XBP1P17861 261 aa25.01■■□□□ 1.59
SHMT1-202ENST00000352886 PKN1Q16512 942 aa25.01■■□□□ 1.59
SHMT1-202ENST00000352886 OLFM4Q6UX06 510 aa25.01■■□□□ 1.59
SHMT1-202ENST00000352886 AATFQ9NY61 560 aaKnown RBP eCLIP25.01■■□□□ 1.59
SHMT1-202ENST00000352886 hCG_1642624A0A1W2PR95 340 aa25■■□□□ 1.59
SHMT1-202ENST00000352886 PCP11498 1178 aaKnown RBP25■■□□□ 1.59
SHMT1-202ENST00000352886 HIBADHP31937 336 aaKnown RBP25■■□□□ 1.59
SHMT1-202ENST00000352886 MDM2Q00987 491 aaPredicted RBP25■■□□□ 1.59
SHMT1-202ENST00000352886 CEP131Q9UPN4 1083 aa25■■□□□ 1.59
SHMT1-202ENST00000352886 COL24A1Q17RW2 1714 aa25■■□□□ 1.59
SHMT1-202ENST00000352886 POLR2DO15514 142 aaKnown RBP25■■□□□ 1.59
SHMT1-202ENST00000352886 PLEKHA8P1O95397 391 aa25■■□□□ 1.59
SHMT1-202ENST00000352886 EVX2Q03828 476 aa25■■□□□ 1.59
SHMT1-202ENST00000352886 FUT2Q10981 343 aa25■■□□□ 1.59
SHMT1-202ENST00000352886 HOOK1Q9UJC3 728 aaKnown RBP25■■□□□ 1.59
SHMT1-202ENST00000352886 PAXBP1Q9Y5B6 917 aa25■■□□□ 1.59
SHMT1-202ENST00000352886 CTIFO43310 598 aaKnown RBP24.99■■□□□ 1.59
SHMT1-202ENST00000352886 ZPR1O75312 459 aa24.99■■□□□ 1.59
SHMT1-202ENST00000352886 RPS6KA4O75676 772 aa24.99■■□□□ 1.59
SHMT1-202ENST00000352886 TROAPQ12815 778 aa24.99■■□□□ 1.59
SHMT1-202ENST00000352886 ARMCX5Q6P1M9 558 aa24.99■■□□□ 1.59
SHMT1-202ENST00000352886 ELOA2Q8IYF1 753 aaPredicted RBP24.99■■□□□ 1.59
SHMT1-202ENST00000352886 CCDC150Q8NCX0 1101 aa24.99■■□□□ 1.59
SHMT1-202ENST00000352886 SRPRBQ9Y5M8 271 aaKnown RBP24.99■■□□□ 1.59
SHMT1-202ENST00000352886 GNPATO15228 680 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 PRDX5P30044 214 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 CEP135Q66GS9 1140 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 ZNF579Q8NAF0 562 aaKnown RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 ANKRD2Q9GZV1 360 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 RBM28Q9NW13 759 aaKnown RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 TRMT1Q9NXH9 659 aaKnown RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 V9GY48 417 aaPredicted RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 CCDC88AQ3V6T2 1871 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 LAMB1P07942 1786 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 FAM205CA6NFA0 338 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 PRPF3O43395 683 aaKnown RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 BMP6P22004 513 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 POSTNQ15063 836 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 RC3H1Q5TC82 1133 aaKnown RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 CCAR2Q8N163 923 aaKnown RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 PHF20Q9BVI0 1012 aa24.98■■□□□ 1.59
SHMT1-202ENST00000352886 DCP1AQ9NPI6 582 aaPredicted RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 PDS5AQ29RF7 1337 aaKnown RBP24.98■■□□□ 1.59
SHMT1-202ENST00000352886 CALM1P0DP23 149 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 CALM2P0DP24 149 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 CALM3P0DP25 149 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 PTPN14Q15678 1187 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 NYAP1Q6ZVC0 841 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 ZNF592Q92610 1267 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 C8orf37Q96NL8 207 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 SERTAD1Q9UHV2 236 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 BTAF1O14981 1849 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 SFPQP23246 707 aaKnown RBP eCLIP24.97■■□□□ 1.59
SHMT1-202ENST00000352886 KRT2P35908 639 aa24.97■■□□□ 1.59
SHMT1-202ENST00000352886 CRNKL1Q9BZJ0 848 aaKnown RBP24.97■■□□□ 1.59
SHMT1-202ENST00000352886 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.97■■□□□ 1.59
SHMT1-202ENST00000352886 SERPINC1P01008 464 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 UBASH3AP57075 661 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 TPTE2Q6XPS3 522 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 PDILTQ8N807 584 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 NGLY1Q96IV0 654 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 CSRNP2Q9H175 543 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 VPS72Q15906 364 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 EARS2Q5JPH6 523 aaKnown RBP24.96■■□□□ 1.59
SHMT1-202ENST00000352886 DPF2Q92785 391 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 ARID3AQ99856 593 aa24.96■■□□□ 1.59
SHMT1-202ENST00000352886 NMT2O60551 498 aa24.95■■□□□ 1.59
SHMT1-202ENST00000352886 DDAH1O94760 285 aa24.95■■□□□ 1.59
SHMT1-202ENST00000352886 PRR29P0C7W0 189 aa24.95■■□□□ 1.59
SHMT1-202ENST00000352886 PDE4BQ07343 736 aa24.95■■□□□ 1.59
SHMT1-202ENST00000352886 USP49Q70CQ1 688 aa24.95■■□□□ 1.59
SHMT1-202ENST00000352886 FANCLQ9NW38 375 aa24.95■■□□□ 1.59
SHMT1-202ENST00000352886 MAN1B1Q9UKM7 699 aa24.95■■□□□ 1.59
SHMT1-202ENST00000352886 JAG2Q9Y219 1238 aa24.95■■□□□ 1.59
SHMT1-202ENST00000352886 MAST2Q6P0Q8 1798 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms