RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 RNF214Q8ND24 703 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 TTF2Q9UNY4 1162 aaKnown RBP14.87□□□□□ -0.03
CLK3-201ENST00000345005 DAGLAQ9Y4D2 1042 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.87□□□□□ -0.03
CLK3-201ENST00000345005 ZNF646O15015 1829 aaPredicted RBP14.87□□□□□ -0.03
CLK3-201ENST00000345005 PRDM1O75626 825 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 POLR3DP05423 398 aaPredicted RBP14.87□□□□□ -0.03
CLK3-201ENST00000345005 CDC27P30260 824 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 RHBDL3P58872 404 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 RESTQ13127 1097 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 STRIP1Q5VSL9 837 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 HHIPL2Q6UWX4 724 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 ZNF654Q8IZM8 581 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 CERS5Q8N5B7 392 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 DBNDD1Q9H9R9 158 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 ZNF287Q9HBT7 754 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 GDPD2Q9HCC8 539 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 USP25Q9UHP3 1055 aa14.87□□□□□ -0.03
CLK3-201ENST00000345005 DDX60LQ5H9U9 1706 aaKnown RBP14.87□□□□□ -0.03
CLK3-201ENST00000345005 MYH8P13535 1937 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 PSME4Q14997 1843 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 RXRAP19793 462 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 IARSP41252 1262 aaKnown RBP14.86□□□□□ -0.03
CLK3-201ENST00000345005 RBM10P98175 930 aaKnown RBP14.86□□□□□ -0.03
CLK3-201ENST00000345005 NOLC1Q14978 699 aaKnown RBP eCLIP14.86□□□□□ -0.03
CLK3-201ENST00000345005 NTRK3Q16288 839 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 IFIT1BQ5T764 474 aaKnown RBP14.86□□□□□ -0.03
CLK3-201ENST00000345005 MAPKAPK5Q8IW41 473 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 ENAHQ8N8S7 591 aaPredicted RBP14.86□□□□□ -0.03
CLK3-201ENST00000345005 C8orf76Q96K31 380 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 MYL10Q9BUA6 226 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 MRIQ9BWK5 157 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 SCAND2PQ9GZW5 306 aaPredicted RBP14.86□□□□□ -0.03
CLK3-201ENST00000345005 FAM217BQ9NTX9 383 aaPredicted RBP14.86□□□□□ -0.03
CLK3-201ENST00000345005 SPTLC3Q9NUV7 552 aa14.86□□□□□ -0.03
CLK3-201ENST00000345005 FIBPO43427 364 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 ECE2O60344 883 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 RTN1Q16799 776 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 CCDC178Q5BJE1 867 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 CCDC144CPQ8IYA2 1237 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 RTKN2Q8IZC4 609 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 SNED1Q8TER0 1413 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 TSPY2A6NKD2 308 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 F8W031 263 aaPredicted RBP14.85□□□□□ -0.03
CLK3-201ENST00000345005 C21orf2O43822 256 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 CALM1P0DP23 149 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 CALM2P0DP24 149 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 CALM3P0DP25 149 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 IFNAR1P17181 557 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 EVX2Q03828 476 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 SSRP1Q08945 709 aaKnown RBP14.85□□□□□ -0.03
CLK3-201ENST00000345005 ATL3Q6DD88 541 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 CATIPQ7Z7H3 387 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 FANCBQ8NB91 859 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 FBXO18Q8NFZ0 1043 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 WASF1Q92558 559 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 TEKT1Q969V4 418 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 MKNK2Q9HBH9 465 aa14.85□□□□□ -0.03
CLK3-201ENST00000345005 FLT1P17948 1338 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 STK36Q9NRP7 1315 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 USP17L3A6NCW0 530 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 USP17L4A6NCW7 530 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 PPFIA3O75145 1194 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 GADD45BO75293 160 aaPredicted RBP14.84□□□□□ -0.03
CLK3-201ENST00000345005 FOSBP53539 338 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 HDLBPQ00341 1268 aaKnown RBP14.84□□□□□ -0.03
CLK3-201ENST00000345005 CCDC93Q567U6 631 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 USP17L1Q7RTZ2 530 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 ZNF444Q8N0Y2 327 aaPredicted RBP14.84□□□□□ -0.03
CLK3-201ENST00000345005 CCDC94Q9BW85 323 aaPredicted RBP14.84□□□□□ -0.03
CLK3-201ENST00000345005 SAP30BPQ9UHR5 308 aaKnown RBP14.84□□□□□ -0.03
CLK3-201ENST00000345005 CFAP45Q9UL16 551 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 ELP1O95163 1332 aa14.84□□□□□ -0.03
CLK3-201ENST00000345005 FMNL1O95466 1100 aaPredicted RBP14.83□□□□□ -0.04
CLK3-201ENST00000345005 ADCY5O95622 1261 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 DPEP1P16444 411 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 AOC3Q16853 763 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 FAM47AQ5JRC9 791 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 TRIM22Q8IYM9 498 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 NUP133Q8WUM0 1156 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 ALG1Q9BT22 464 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 MXD3Q9BW11 206 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 ADAMTSL1Q8N6G6 1762 aa14.83□□□□□ -0.04
CLK3-201ENST00000345005 DDAH1O94760 285 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 KCNA3P22001 575 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 POLD1P28340 1107 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 PLCD1P51178 756 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 TFAP4Q01664 338 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 GUCY1B3Q02153 619 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 DACT2Q5SW24 774 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 FAM173BQ6P4H8 233 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 DYNLL2Q96FJ2 89 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 ZNF396Q96N95 335 aaPredicted RBP14.82□□□□□ -0.04
CLK3-201ENST00000345005 PSMD1Q99460 953 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 KCNQ5Q9NR82 932 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 TCP11L1Q9NUJ3 509 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 RBM28Q9NW13 759 aaKnown RBP14.82□□□□□ -0.04
CLK3-201ENST00000345005 PPIP5K2O43314 1243 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 SCNN1DP51172 638 aa14.82□□□□□ -0.04
CLK3-201ENST00000345005 TGFB2P61812 414 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms