RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LY9Q9HBG7 655 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 HOOK1Q9UJC3 728 aaKnown RBP25.5■■□□□ 1.67
TRIM28-202ENST00000341753 FBXO2Q9UK22 296 aaPredicted RBP25.5■■□□□ 1.67
TRIM28-202ENST00000341753 PCDHB6Q9Y5E3 794 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 SNAP23O00161 211 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 MUM1L1Q5H9M0 696 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 ZNF569Q5MCW4 686 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 NUTM2AQ8IVF1 878 aaPredicted RBP25.5■■□□□ 1.67
TRIM28-202ENST00000341753 C10orf67Q8IYJ2 551 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 TTLL11Q8NHH1 800 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 WDR19Q8NEZ3 1342 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 CCDC151A5D8V7 595 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 CSF1RP07333 972 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 RHOXF2BP0C7M4 288 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 CYP19A1P11511 503 aaPredicted RBP25.5■■□□□ 1.67
TRIM28-202ENST00000341753 CTDSPL2Q05D32 466 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 SSRP1Q08945 709 aaKnown RBP25.5■■□□□ 1.67
TRIM28-202ENST00000341753 SRGAP1Q7Z6B7 1085 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 MLKLQ8NB16 471 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 AK7Q96M32 723 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 RHOXF2Q9BQY4 288 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 PIH1D3Q9NQM4 214 aaKnown RBP25.5■■□□□ 1.67
TRIM28-202ENST00000341753 ADGRG1Q9Y653 693 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 ABL1P00519 1130 aa25.49■■□□□ 1.67
TRIM28-202ENST00000341753 ZKSCAN3Q9BRR0 538 aa25.49■■□□□ 1.67
TRIM28-202ENST00000341753 TRMT112Q9UI30 125 aaKnown RBP25.49■■□□□ 1.67
TRIM28-202ENST00000341753 ADD2P35612 726 aa25.49■■□□□ 1.67
TRIM28-202ENST00000341753 IGSF22Q8N9C0 903 aa25.49■■□□□ 1.67
TRIM28-202ENST00000341753 CNNM1Q9NRU3 951 aa25.49■■□□□ 1.67
TRIM28-202ENST00000341753 AFMP43652 599 aa25.48■■□□□ 1.67
TRIM28-202ENST00000341753 TRIM28Q13263 835 aaKnown RBP25.48■■□□□ 1.67
TRIM28-202ENST00000341753 SMYD4Q8IYR2 804 aaPredicted RBP25.48■■□□□ 1.67
TRIM28-202ENST00000341753 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.48■■□□□ 1.671e-8■■■□□ 15.2
TRIM28-202ENST00000341753 IRS4O14654 1257 aaPredicted RBP25.48■■□□□ 1.67
TRIM28-202ENST00000341753 SARSP49591 514 aaKnown RBP25.48■■□□□ 1.67
TRIM28-202ENST00000341753 SLC12A7Q9Y666 1083 aa25.48■■□□□ 1.67
TRIM28-202ENST00000341753 IFIT3O14879 490 aaKnown RBP25.47■■□□□ 1.67
TRIM28-202ENST00000341753 KIF4BQ2VIQ3 1234 aa25.47■■□□□ 1.67
TRIM28-202ENST00000341753 ZNF532Q9HCE3 1301 aa25.47■■□□□ 1.67
TRIM28-202ENST00000341753 MAP2K7O14733 419 aa25.47■■□□□ 1.67
TRIM28-202ENST00000341753 PPFIBP1Q86W92 1011 aa25.47■■□□□ 1.67
TRIM28-202ENST00000341753 CDC5LQ99459 802 aaKnown RBP25.47■■□□□ 1.67
TRIM28-202ENST00000341753 RIPOR2Q9Y4F9 1068 aa25.47■■□□□ 1.67
TRIM28-202ENST00000341753 RIC1Q4ADV7 1423 aa25.47■■□□□ 1.67
TRIM28-202ENST00000341753 KIF5CO60282 957 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 PTPREP23469 700 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 BRD3Q15059 726 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 RRP12Q5JTH9 1297 aaKnown RBP25.46■■□□□ 1.67
TRIM28-202ENST00000341753 BEND6Q5SZJ8 279 aaPredicted RBP25.46■■□□□ 1.67
TRIM28-202ENST00000341753 JAKMIP3Q5VZ66 844 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 OXER1Q8TDS5 423 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 ABCB6Q9NP58 842 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 DACH1Q9UI36 760 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 WWC3Q9ULE0 1092 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 SPEF2Q9C093 1822 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 A0A1B0GTH6 734 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 ACRBPQ8NEB7 543 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 EXOC4Q96A65 974 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 CSRNP2Q9H175 543 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 ZSWIM5Q9P217 1185 aa25.46■■□□□ 1.67
TRIM28-202ENST00000341753 MMP1P03956 469 aa25.45■■□□□ 1.67
TRIM28-202ENST00000341753 CD44P16070 742 aaKnown RBP25.45■■□□□ 1.67
TRIM28-202ENST00000341753 PLCD1P51178 756 aa25.45■■□□□ 1.67
TRIM28-202ENST00000341753 CTSWP56202 376 aa25.45■■□□□ 1.67
TRIM28-202ENST00000341753 PLCD3Q8N3E9 789 aa25.45■■□□□ 1.67
TRIM28-202ENST00000341753 ACSBG1Q96GR2 724 aa25.45■■□□□ 1.67
TRIM28-202ENST00000341753 TOMM22Q9NS69 142 aa25.45■■□□□ 1.67
TRIM28-202ENST00000341753 CDC23Q9UJX2 597 aa25.45■■□□□ 1.67
TRIM28-202ENST00000341753 TACC3Q9Y6A5 838 aa25.45■■□□□ 1.67
TRIM28-202ENST00000341753 ACTN4O43707 911 aaKnown RBP25.45■■□□□ 1.66
TRIM28-202ENST00000341753 PHACTR2O75167 634 aa25.45■■□□□ 1.66
TRIM28-202ENST00000341753 SLC20A2Q08357 652 aa25.45■■□□□ 1.66
TRIM28-202ENST00000341753 SAFBQ15424 915 aaKnown RBP eCLIP25.45■■□□□ 1.66
TRIM28-202ENST00000341753 NT5DC1Q5TFE4 455 aa25.45■■□□□ 1.66
TRIM28-202ENST00000341753 MYO1CO00159 1063 aa25.44■■□□□ 1.66
TRIM28-202ENST00000341753 SLC35F6Q8N357 371 aa25.44■■□□□ 1.66
TRIM28-202ENST00000341753 DDX60Q8IY21 1712 aaKnown RBP25.44■■□□□ 1.66
TRIM28-202ENST00000341753 CASP14P31944 242 aa25.44■■□□□ 1.66
TRIM28-202ENST00000341753 APTXQ7Z2E3 356 aaKnown RBP25.44■■□□□ 1.66
TRIM28-202ENST00000341753 TMEM87BQ96K49 555 aa25.44■■□□□ 1.66
TRIM28-202ENST00000341753 PANX2Q96RD6 677 aa25.44■■□□□ 1.66
TRIM28-202ENST00000341753 PLA2G12BQ9BX93 195 aa25.44■■□□□ 1.66
TRIM28-202ENST00000341753 FAM205CA6NFA0 338 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 FMNL1O95466 1100 aaPredicted RBP25.43■■□□□ 1.66
TRIM28-202ENST00000341753 DZIP3Q86Y13 1208 aaKnown RBP25.43■■□□□ 1.66
TRIM28-202ENST00000341753 FAN1Q9Y2M0 1017 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 A0A087X0B3 334 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 EXOC5O00471 708 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 ADAMTS2O95450 1211 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 FOXR1Q6PIV2 292 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 GOLGA5Q8TBA6 731 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 ITGB4P16144 1822 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 CABP5Q9NP86 173 aa25.43■■□□□ 1.66
TRIM28-202ENST00000341753 BCL9O00512 1426 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 ANKRD18BA2A2Z9 1011 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 VSNL1P62760 191 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 STAMQ92783 540 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 EPSTI1Q96J88 318 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 ECM29Q5VYK3 1845 aa25.42■■□□□ 1.66
TRIM28-202ENST00000341753 CCT6AP40227 531 aaKnown RBP25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms