RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 CCDC82Q8N4S0 544 aa16.72■□□□□ 0.27
TDP2-201ENST00000341060 ZNF579Q8NAF0 562 aaKnown RBP16.72■□□□□ 0.27
TDP2-201ENST00000341060 KIF18AQ8NI77 898 aa16.72■□□□□ 0.27
TDP2-201ENST00000341060 NUP133Q8WUM0 1156 aa16.72■□□□□ 0.27
TDP2-201ENST00000341060 RNF26Q9BY78 433 aaPredicted RBP16.72■□□□□ 0.27
TDP2-201ENST00000341060 IQSEC3Q9UPP2 1182 aaPredicted RBP16.72■□□□□ 0.27
TDP2-201ENST00000341060 NR5A1Q13285 461 aa16.71■□□□□ 0.27
TDP2-201ENST00000341060 NT5DC1Q5TFE4 455 aa16.71■□□□□ 0.27
TDP2-201ENST00000341060 RIOK1Q9BRS2 568 aaKnown RBP16.71■□□□□ 0.27
TDP2-201ENST00000341060 QTRT2Q9H974 415 aaKnown RBP16.71■□□□□ 0.27
TDP2-201ENST00000341060 GNL3LQ9NVN8 582 aaKnown RBP16.71■□□□□ 0.27
TDP2-201ENST00000341060 ABCF2Q9UG63 623 aa16.71■□□□□ 0.27
TDP2-201ENST00000341060 TRPC5Q9UL62 973 aaPredicted RBP16.71■□□□□ 0.27
TDP2-201ENST00000341060 KCNQ2O43526 872 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 SERPINC1P01008 464 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 BMP6P22004 513 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 GRIN1Q05586 938 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 UBE4AQ14139 1066 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 POSTNQ15063 836 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 SPECC1Q5M775 1068 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 CLEC4GQ6UXB4 293 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 PPP1R13BQ96KQ4 1090 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 NOL10Q9BSC4 688 aaKnown RBP16.7■□□□□ 0.26
TDP2-201ENST00000341060 RAI14Q9P0K7 980 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 CEP131Q9UPN4 1083 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 PCDHB6Q9Y5E3 794 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 MAST2Q6P0Q8 1798 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 MINDY4BA8MYZ0 360 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 FOXN1O15353 648 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 GYG1P46976 350 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 ANKRD18AQ8IVF6 992 aa16.7■□□□□ 0.26
TDP2-201ENST00000341060 SRPRBQ9Y5M8 271 aaKnown RBP16.7■□□□□ 0.26
TDP2-201ENST00000341060 MORC2Q9Y6X9 1032 aaPredicted RBP16.7■□□□□ 0.26
TDP2-201ENST00000341060 CFAP100Q494V2 611 aa16.69■□□□□ 0.26
TDP2-201ENST00000341060 SMAP1Q8IYB5 467 aaPredicted RBP16.69■□□□□ 0.26
TDP2-201ENST00000341060 OXER1Q8TDS5 423 aa16.69■□□□□ 0.26
TDP2-201ENST00000341060 DPF2Q92785 391 aa16.69■□□□□ 0.26
TDP2-201ENST00000341060 BSDC1Q9NW68 430 aaPredicted RBP16.69■□□□□ 0.26
TDP2-201ENST00000341060 POLR2DO15514 142 aaKnown RBP16.69■□□□□ 0.26
TDP2-201ENST00000341060 SARSP49591 514 aaKnown RBP16.69■□□□□ 0.26
TDP2-201ENST00000341060 SF3B3Q15393 1217 aaKnown RBP16.69■□□□□ 0.26
TDP2-201ENST00000341060 VSTM4Q8IW00 320 aa16.69■□□□□ 0.26
TDP2-201ENST00000341060 ENAHQ8N8S7 591 aaPredicted RBP16.69■□□□□ 0.26
TDP2-201ENST00000341060 BRIP1Q9BX63 1249 aa16.69■□□□□ 0.26
TDP2-201ENST00000341060 FANCLQ9NW38 375 aa16.69■□□□□ 0.26
TDP2-201ENST00000341060 KIAA1551Q9HCM1 1747 aa16.68■□□□□ 0.26
TDP2-201ENST00000341060 TUBB4AP04350 444 aa16.68■□□□□ 0.26
TDP2-201ENST00000341060 XBP1P17861 261 aa16.68■□□□□ 0.26
TDP2-201ENST00000341060 PDE4BQ07343 736 aa16.68■□□□□ 0.26
TDP2-201ENST00000341060 ZSCAN10Q96SZ4 725 aaPredicted RBP16.68■□□□□ 0.26
TDP2-201ENST00000341060 ZMYND15Q9H091 742 aa16.68■□□□□ 0.26
TDP2-201ENST00000341060 CGNQ9P2M7 1197 aaKnown RBP16.68■□□□□ 0.26
TDP2-201ENST00000341060 MAN1B1Q9UKM7 699 aa16.68■□□□□ 0.26
TDP2-201ENST00000341060 PCP11498 1178 aaKnown RBP16.67■□□□□ 0.26
TDP2-201ENST00000341060 NAA30Q147X3 362 aaPredicted RBP16.67■□□□□ 0.26
TDP2-201ENST00000341060 ERFEQ4G0M1 354 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 CAVIN4Q5BKX8 364 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 KANK3Q6NY19 840 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 TRIML1Q8N9V2 468 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 SHISA4Q96DD7 197 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 TMX1Q9H3N1 280 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 ZNF215Q9UL58 517 aaPredicted RBP16.67■□□□□ 0.26
TDP2-201ENST00000341060 SMIM22K7EJ46 135 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 CCP110O43303 1012 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 FGRP09769 529 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 AKAP17AQ02040 695 aaKnown RBP16.67■□□□□ 0.26
TDP2-201ENST00000341060 FUT2Q10981 343 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 PKN1Q16512 942 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 MLKLQ8NB16 471 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 SMARCC1Q92922 1105 aaPredicted RBP16.67■□□□□ 0.26
TDP2-201ENST00000341060 FEZ1Q99689 392 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 PHF20Q9BVI0 1012 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 CABP5Q9NP86 173 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 SERTAD1Q9UHV2 236 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 DACH1Q9UI36 760 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 COL24A1Q17RW2 1714 aa16.67■□□□□ 0.26
TDP2-201ENST00000341060 ACTN4O43707 911 aaKnown RBP16.66■□□□□ 0.26
TDP2-201ENST00000341060 PRR29P0C7W0 189 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 MORC3Q14149 939 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 C3orf67Q6ZVT6 689 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 SPATA20Q8TB22 786 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 SMARCE1Q969G3 411 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 ERO1AQ96HE7 468 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 RBM28Q9NW13 759 aaKnown RBP16.66■□□□□ 0.26
TDP2-201ENST00000341060 WTIPA6NIX2 430 aaPredicted RBP16.66■□□□□ 0.26
TDP2-201ENST00000341060 PRPF3O43395 683 aaKnown RBP16.66■□□□□ 0.26
TDP2-201ENST00000341060 TOP1P11387 765 aaKnown RBP16.66■□□□□ 0.26
TDP2-201ENST00000341060 IFIT1BQ5T764 474 aaKnown RBP16.66■□□□□ 0.26
TDP2-201ENST00000341060 PTF1AQ7RTS3 328 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 CATIPQ7Z7H3 387 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 IQCA1Q86XH1 822 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 SEPT12Q8IYM1 358 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 ZNF384Q8TF68 577 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 CSRNP2Q9H175 543 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 L2HGDHQ9H9P8 463 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 INTS13Q9NVM9 706 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 MINPP1Q9UNW1 487 aa16.66■□□□□ 0.26
TDP2-201ENST00000341060 CALM1P0DP23 149 aa16.65■□□□□ 0.26
TDP2-201ENST00000341060 CALM2P0DP24 149 aa16.65■□□□□ 0.26
TDP2-201ENST00000341060 CALM3P0DP25 149 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms