RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 PATL2C9JE40 543 aaKnown RBP6.43□□□□□ -1.38
CSDE1-202ENST00000339438 PPFIA4O75335 1185 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 SYF2O95926 243 aaKnown RBP6.43□□□□□ -1.38
CSDE1-202ENST00000339438 SERPINB2P05120 415 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 MCCP23508 829 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 GPTP24298 496 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 SCNN1DP51172 638 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 ZNF280AP59817 542 aaPredicted RBP6.43□□□□□ -1.38
CSDE1-202ENST00000339438 GCKRQ14397 625 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 NCAPHQ15003 741 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 OLFM4Q6UX06 510 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 METTL16Q86W50 562 aaKnown RBP6.43□□□□□ -1.38
CSDE1-202ENST00000339438 MSANTD4Q8NCY6 345 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 ZSWIM6Q9HCJ5 1215 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 VPS18Q9P253 973 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 SMC3Q9UQE7 1217 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 LAMA3Q16787 3333 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 APBB1O00213 710 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 IL1R1P14778 569 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 TDO2P48775 406 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 KRT85P78386 507 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 PI4K2BQ8TCG2 481 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 TATDN2Q93075 761 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 TPCN1Q9ULQ1 816 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 CNTNAP1P78357 1384 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 FKBP1AP62942 108 aaKnown RBP6.43□□□□□ -1.38
CSDE1-202ENST00000339438 FBXW10Q5XX13 1052 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 KSR2Q6VAB6 950 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 BICC1Q9H694 974 aaKnown RBP6.43□□□□□ -1.38
CSDE1-202ENST00000339438 POLLQ9UGP5 575 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 KIAA1217Q5T5P2 1943 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 ZNF541Q9H0D2 1346 aa6.43□□□□□ -1.38
CSDE1-202ENST00000339438 FOXP2O15409 715 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 SRGAP3O43295 1099 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 TXLNAP40222 546 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 ISM2Q6H9L7 571 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 MTMR14Q8NCE2 650 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 RTCBQ9Y3I0 505 aaKnown RBP6.42□□□□□ -1.38
CSDE1-202ENST00000339438 TBC1D8BQ0IIM8 1120 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 SEMA3FQ13275 785 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 GORABQ5T7V8 394 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 WLSQ5T9L3 541 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 TACO1Q9BSH4 297 aaKnown RBP6.42□□□□□ -1.38
CSDE1-202ENST00000339438 XPO4Q9C0E2 1151 aaKnown RBP6.42□□□□□ -1.38
CSDE1-202ENST00000339438 DBF4Q9UBU7 674 aaPredicted RBP6.42□□□□□ -1.38
CSDE1-202ENST00000339438 DOCK5Q9H7D0 1870 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 F6X3S4 739 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 SCRN1Q12765 414 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 BRD3Q15059 726 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 LEKR1Q6ZMV7 388 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.42□□□□□ -1.38
CSDE1-202ENST00000339438 BPIFA3Q9BQP9 254 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 ATP6V0A2Q9Y487 856 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 SALL1Q9NSC2 1324 aa6.42□□□□□ -1.38
CSDE1-202ENST00000339438 LRRIQ3A6PVS8 624 aaPredicted RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 AARSP49588 968 aaKnown RBP eCLIP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 RESTQ13127 1097 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 WWC2Q6AWC2 1192 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 CCDC150Q8NCX0 1101 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 CNNM3Q8NE01 707 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 XAGE3Q8WTP9 111 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 SCAND2PQ9GZW5 306 aaPredicted RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 FAM155AB1AL88 458 aaPredicted RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 PTCD1O75127 700 aaKnown RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 SLC4A2P04920 1241 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 AIMP1Q12904 312 aaKnown RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 GRIK3Q13003 919 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 MOGSQ13724 837 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 STX1AQ16623 288 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 FERMT3Q86UX7 667 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 TFIP11Q9UBB9 837 aaKnown RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 GRIN2DO15399 1336 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 A0A087WZG4 1122 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 PNMA6EA0A0J9YXQ4 647 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 GOLIM4O00461 696 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 CHRNA5P30532 468 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 HIRAP54198 1017 aaPredicted RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 PPP2R3AQ06190 1150 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 DZIP3Q86Y13 1208 aaKnown RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 NECAB1Q8N987 351 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 ZKSCAN4Q969J2 545 aaPredicted RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 TM6SF1Q9BZW5 370 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 TANC1Q9C0D5 1861 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 NECTIN1Q15223 517 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 COPS6Q7L5N1 327 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 ZNF512BQ96KM6 892 aaPredicted RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 SPATA32Q96LK8 384 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 MPHOSPH8Q99549 860 aa6.41□□□□□ -1.38
CSDE1-202ENST00000339438 GNL3LQ9NVN8 582 aaKnown RBP6.41□□□□□ -1.38
CSDE1-202ENST00000339438 URI1O94763 535 aaPredicted RBP6.4□□□□□ -1.38
CSDE1-202ENST00000339438 SMC2O95347 1197 aa6.4□□□□□ -1.38
CSDE1-202ENST00000339438 MRPL12P52815 198 aaKnown RBP6.4□□□□□ -1.38
CSDE1-202ENST00000339438 PTH1RQ03431 593 aa6.4□□□□□ -1.38
CSDE1-202ENST00000339438 PPP2R5AQ15172 486 aa6.4□□□□□ -1.38
CSDE1-202ENST00000339438 LRCH2Q5VUJ6 765 aa6.4□□□□□ -1.38
CSDE1-202ENST00000339438 SP8Q8IXZ3 490 aa6.4□□□□□ -1.38
CSDE1-202ENST00000339438 AOPEPQ8N6M6 819 aa6.4□□□□□ -1.38
CSDE1-202ENST00000339438 DHX58Q96C10 678 aa6.4□□□□□ -1.38
CSDE1-202ENST00000339438 ABCB6Q9NP58 842 aa6.4□□□□□ -1.38
CSDE1-202ENST00000339438 ADGRA2Q96PE1 1338 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms