RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 ZNF396Q96N95 335 aaPredicted RBP26.06■■□□□ 1.76
PDLIM2-203ENST00000339162 USP17L3A6NCW0 530 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 USP17L4A6NCW7 530 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 ECE2O60344 883 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 RCAN1P53805 252 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 RCSD1Q6JBY9 416 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 USP17L1Q7RTZ2 530 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 RBSNQ9H1K0 784 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 CDK5RAP2Q96SN8 1893 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 STK36Q9NRP7 1315 aa26.05■■□□□ 1.76
PDLIM2-203ENST00000339162 hCG_1642624A0A1W2PR95 340 aa26.04■■□□□ 1.76
PDLIM2-203ENST00000339162 PLEKHA8P1O95397 391 aa26.04■■□□□ 1.76
PDLIM2-203ENST00000339162 SUGT1Q9Y2Z0 365 aa26.04■■□□□ 1.76
PDLIM2-203ENST00000339162 QSER1Q2KHR3 1735 aa26.04■■□□□ 1.76
PDLIM2-203ENST00000339162 ROBO3Q96MS0 1386 aa26.04■■□□□ 1.76
PDLIM2-203ENST00000339162 RCOR1Q9UKL0 485 aa26.04■■□□□ 1.76
PDLIM2-203ENST00000339162 ECM29Q5VYK3 1845 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 TRIM29Q14134 588 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 KIAA0825Q8IV33 1275 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 ZNF444Q8N0Y2 327 aaPredicted RBP26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 BICD2Q8TD16 824 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 MYH15Q9Y2K3 1946 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 TSPY3P0CV98 308 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 TSPY8P0CW00 308 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 MYSM1Q5VVJ2 828 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 KCNJ14Q9UNX9 436 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 CLIC4Q9Y696 253 aa26.03■■□□□ 1.76
PDLIM2-203ENST00000339162 PCDHAC2Q9Y5I4 1007 aa26.02■■□□□ 1.76
PDLIM2-203ENST00000339162 RASA1P20936 1047 aa26.02■■□□□ 1.76
PDLIM2-203ENST00000339162 CDK8P49336 464 aa26.02■■□□□ 1.76
PDLIM2-203ENST00000339162 GNL2Q13823 731 aaKnown RBP26.02■■□□□ 1.76
PDLIM2-203ENST00000339162 BRAPQ7Z569 592 aa26.02■■□□□ 1.76
PDLIM2-203ENST00000339162 DDX4Q9NQI0 724 aaKnown RBP26.02■■□□□ 1.76
PDLIM2-203ENST00000339162 USP40Q9NVE5 1235 aa26.02■■□□□ 1.76
PDLIM2-203ENST00000339162 DEXIO95424 95 aa26.01■■□□□ 1.75
PDLIM2-203ENST00000339162 DACT1Q9NYF0 836 aa26.01■■□□□ 1.75
PDLIM2-203ENST00000339162 ADAMTSL1Q8N6G6 1762 aa26.01■■□□□ 1.75
PDLIM2-203ENST00000339162 CAMK4Q16566 473 aa26■■□□□ 1.75
PDLIM2-203ENST00000339162 WASF1Q92558 559 aa26■■□□□ 1.75
PDLIM2-203ENST00000339162 C10orf71Q711Q0 1435 aa26■■□□□ 1.75
PDLIM2-203ENST00000339162 WDHD1O75717 1129 aaPredicted RBP26■■□□□ 1.75
PDLIM2-203ENST00000339162 DDAH1O94760 285 aa26■■□□□ 1.75
PDLIM2-203ENST00000339162 FUT2Q10981 343 aa26■■□□□ 1.75
PDLIM2-203ENST00000339162 ATL3Q6DD88 541 aa26■■□□□ 1.75
PDLIM2-203ENST00000339162 TEKT1Q969V4 418 aa26■■□□□ 1.75
PDLIM2-203ENST00000339162 DLEC1Q9Y238 1755 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 CALM1P0DP23 149 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 CALM2P0DP24 149 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 CALM3P0DP25 149 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 PPP2R5BQ15173 497 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 DACT2Q5SW24 774 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 APOBEC3HQ6NTF7 200 aaKnown RBP25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 C16orf86Q6ZW13 317 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 KAT14Q9H8E8 782 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 RTEL1Q9NZ71 1219 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 MTMR7Q9Y216 660 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 V9GY48 417 aaPredicted RBP25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 SCN9AQ15858 1988 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 ZBTB7AO95365 584 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 DPEP1P16444 411 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 ME1P48163 572 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 NASPP49321 788 aaPredicted RBP25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 STRIP1Q5VSL9 837 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 CDC42EP5Q6NZY7 148 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 RNF214Q8ND24 703 aa25.99■■□□□ 1.75
PDLIM2-203ENST00000339162 NR1I2O75469 434 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 CRKP46108 304 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 TTLL6Q8N841 843 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 CTCFLQ8NI51 663 aaPredicted RBP25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 RBM28Q9NW13 759 aaKnown RBP25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 STX8Q9UNK0 236 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 SNED1Q8TER0 1413 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 BTBD18B2RXH4 712 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 PPIP5K2O43314 1243 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 AKAP17AQ02040 695 aaKnown RBP25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 KIAA2012Q0VF49 1180 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 TMTC3Q6ZXV5 915 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 SRBD1Q8N5C6 995 aaKnown RBP25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 PIBF1Q8WXW3 757 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 RNF26Q9BY78 433 aaPredicted RBP25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 TSPY26PQ9H489 355 aa25.98■■□□□ 1.75
PDLIM2-203ENST00000339162 KCNA3P22001 575 aa25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 PKN1Q16512 942 aa25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 HHIPL2Q6UWX4 724 aa25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 DGKHQ86XP1 1220 aa25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 LINC00301Q8NCQ3 95 aa25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 PNMA1Q8ND90 353 aa25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 SHISA4Q96DD7 197 aa25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 MYH1P12882 1939 aa25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 DDX60LQ5H9U9 1706 aaKnown RBP25.97■■□□□ 1.75
PDLIM2-203ENST00000339162 MMP1P03956 469 aa25.96■■□□□ 1.75
PDLIM2-203ENST00000339162 CACNB3P54284 484 aa25.96■■□□□ 1.75
PDLIM2-203ENST00000339162 STK38Q15208 465 aa25.96■■□□□ 1.75
PDLIM2-203ENST00000339162 U2AF2P26368 475 aaKnown RBP eCLIP25.96■■□□□ 1.75
PDLIM2-203ENST00000339162 RBM5P52756 815 aaKnown RBP eCLIP25.96■■□□□ 1.75
PDLIM2-203ENST00000339162 NFIAQ12857 509 aa25.96■■□□□ 1.75
PDLIM2-203ENST00000339162 DIS3L2Q8IYB7 885 aaKnown RBP25.96■■□□□ 1.75
PDLIM2-203ENST00000339162 ZNF287Q9HBT7 754 aa25.96■■□□□ 1.75
PDLIM2-203ENST00000339162 VPS54Q9P1Q0 977 aa25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms