RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ITKQ08881 620 aa14.02□□□□□ -0.16
SDC3-201ENST00000336798 G2E3Q7L622 706 aa14.02□□□□□ -0.16
SDC3-201ENST00000336798 NAPGQ99747 312 aaPredicted RBP14.02□□□□□ -0.16
SDC3-201ENST00000336798 ATP5DP30049 168 aa14.02□□□□□ -0.16
SDC3-201ENST00000336798 FAM98CQ17RN3 349 aaKnown RBP14.02□□□□□ -0.16
SDC3-201ENST00000336798 SMCR8Q8TEV9 937 aaPredicted RBP14.02□□□□□ -0.16
SDC3-201ENST00000336798 NAP1L4Q99733 375 aaKnown RBP14.02□□□□□ -0.16
SDC3-201ENST00000336798 FAM114A2Q9NRY5 505 aa14.02□□□□□ -0.16
SDC3-201ENST00000336798 SEPT10Q9P0V9 454 aa14.02□□□□□ -0.16
SDC3-201ENST00000336798 TNNI1P19237 187 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 PCK1P35558 622 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 ADCY7P51828 1080 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 TTC38Q5R3I4 469 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 CMTR1Q8N1G2 835 aaKnown RBP14.02□□□□□ -0.17
SDC3-201ENST00000336798 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.02□□□□□ -0.17
SDC3-201ENST00000336798 FAM227BQ96M60 508 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 NOX5Q96PH1 765 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 HELLSQ9NRZ9 838 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 PPME1Q9Y570 386 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 SLC27A2O14975 620 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 CLNS1AP54105 237 aaKnown RBP14.02□□□□□ -0.17
SDC3-201ENST00000336798 PUM3Q15397 648 aaKnown RBP14.02□□□□□ -0.17
SDC3-201ENST00000336798 HHATQ5VTY9 493 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 C17orf53Q8N3J3 647 aaPredicted RBP14.02□□□□□ -0.17
SDC3-201ENST00000336798 DBNDD2Q9BQY9 259 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.02□□□□□ -0.17
SDC3-201ENST00000336798 PCDH11XQ9BZA7 1347 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 PCDH11YQ9BZA8 1340 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 SCYL2Q6P3W7 929 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 CYP26C1Q6V0L0 522 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 CAPN12Q6ZSI9 719 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 LRRC43Q8N309 656 aa14.02□□□□□ -0.17
SDC3-201ENST00000336798 PCF11O94913 1555 aaKnown RBP14.01□□□□□ -0.17
SDC3-201ENST00000336798 H0YIN7 160 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 CETN3O15182 167 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 TSTA3Q13630 321 aaPredicted RBP14.01□□□□□ -0.17
SDC3-201ENST00000336798 CALCRLQ16602 461 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 ANO1Q5XXA6 986 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 RPAINQ86UA6 219 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 CDAN1Q8IWY9 1227 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 RLBP1P12271 317 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 PAK1Q13153 545 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 PLEKHM2Q8IWE5 1019 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 AFAP1L1Q8TED9 768 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 GDAP1L1Q96MZ0 367 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 EYA1Q99502 592 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 CARD10Q9BWT7 1032 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 LRWD1Q9UFC0 647 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 FAM102BQ5T8I3 360 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 CCDC105Q8IYK2 499 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 NUF2Q9BZD4 464 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 VPS37BQ9H9H4 285 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 SYNJ2BP-COX16A0A087WUM0 186 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 RIOK3O14730 519 aaKnown RBP14.01□□□□□ -0.17
SDC3-201ENST00000336798 ARFGAP2Q8N6H7 521 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 OTUD7AQ8TE49 926 aaPredicted RBP14.01□□□□□ -0.17
SDC3-201ENST00000336798 GLG1Q92896 1179 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 DCAF5Q96JK2 942 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 COX16Q9P0S2 106 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 DNM3Q9UQ16 869 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 KIF3CO14782 793 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 GPAA1O43292 621 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 ACTN4O43707 911 aaKnown RBP14.01□□□□□ -0.17
SDC3-201ENST00000336798 MAP2K2P36507 400 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 DNM2P50570 870 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 TNNI3KQ59H18 835 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 TRMT44Q8IYL2 757 aaKnown RBP14.01□□□□□ -0.17
SDC3-201ENST00000336798 MCUR1Q96AQ8 359 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 PHACTR3Q96KR7 559 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 FPGT-TNNI3KV9GXZ4 949 aa14.01□□□□□ -0.17
SDC3-201ENST00000336798 FRMPD2Q68DX3 1309 aaPredicted RBP14□□□□□ -0.17
SDC3-201ENST00000336798 CCDC89Q8N998 374 aa14□□□□□ -0.17
SDC3-201ENST00000336798 TESPA1A2RU30 521 aaPredicted RBP14□□□□□ -0.17
SDC3-201ENST00000336798 KRT15P19012 456 aa14□□□□□ -0.17
SDC3-201ENST00000336798 SAT1P21673 171 aa14□□□□□ -0.17
SDC3-201ENST00000336798 YARSP54577 528 aaKnown RBP14□□□□□ -0.17
SDC3-201ENST00000336798 VWA3BQ502W6 1294 aa14□□□□□ -0.17
SDC3-201ENST00000336798 SECISBP2LQ93073 1101 aaKnown RBP14□□□□□ -0.17
SDC3-201ENST00000336798 A1BGP04217 495 aa14□□□□□ -0.17
SDC3-201ENST00000336798 PDE1CQ14123 709 aaPredicted RBP14□□□□□ -0.17
SDC3-201ENST00000336798 ERCC6LQ2NKX8 1250 aa14□□□□□ -0.17
SDC3-201ENST00000336798 SH2D4BQ5SQS7 431 aa14□□□□□ -0.17
SDC3-201ENST00000336798 LMTK3Q96Q04 1460 aa14□□□□□ -0.17
SDC3-201ENST00000336798 PRXQ9BXM0 1461 aa14□□□□□ -0.17
SDC3-201ENST00000336798 ANKRD42Q8N9B4 389 aa14□□□□□ -0.17
SDC3-201ENST00000336798 RILPQ96NA2 401 aa14□□□□□ -0.17
SDC3-201ENST00000336798 CYP2J2P51589 502 aa14□□□□□ -0.17
SDC3-201ENST00000336798 GCP02774 474 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 RFC1P35251 1148 aaPredicted RBP13.99□□□□□ -0.17
SDC3-201ENST00000336798 RSPH3Q86UC2 560 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 DIS3L2Q8IYB7 885 aaKnown RBP13.99□□□□□ -0.17
SDC3-201ENST00000336798 CNPY4Q8N129 248 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 DDX17Q92841 729 aaKnown RBP13.99□□□□□ -0.17
SDC3-201ENST00000336798 CARD6Q9BX69 1037 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 NLRC4Q9NPP4 1024 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 DDX21Q9NR30 783 aaKnown RBP eCLIP13.99□□□□□ -0.17
SDC3-201ENST00000336798 NELFBQ8WX92 580 aa13.99□□□□□ -0.17
SDC3-201ENST00000336798 DENND4BO75064 1496 aaPredicted RBP13.99□□□□□ -0.17
SDC3-201ENST00000336798 CASQ2O14958 399 aaPredicted RBP13.99□□□□□ -0.17
SDC3-201ENST00000336798 NXNQ6DKJ4 435 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms