RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 M0R2C6 588 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 SHMT1P34896 483 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 SPP2Q13103 211 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 DGKZQ13574 1117 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 IFFO2Q5TF58 517 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 PLEKHM2Q8IWE5 1019 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 ZNF280CQ8ND82 737 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 SEC62Q99442 399 aaKnown RBP19.03■□□□□ 0.64
CLN3-201ENST00000333496 FSD1Q9BTV5 496 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 ZFYVE28Q9HCC9 887 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 CENPFP49454 3210 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 PDHXO00330 501 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 MCOLN1Q9GZU1 580 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 ZBTB21Q9ULJ3 1066 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 ZSWIM8A7E2V4 1837 aa19.03■□□□□ 0.64
CLN3-201ENST00000333496 HTTP42858 3142 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 CYP2D7A0A087X1C5 515 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 GSG1L2A8MUP6 293 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 USP17L12C9JPN9 530 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 USP17L21D6R901 530 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 GPAA1O43292 621 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 CAP1Q01518 475 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 ZMYM1Q5SVZ6 1142 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 EVI5LQ96CN4 794 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 TBC1D2Q9BYX2 928 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 OSBPL3Q9H4L5 887 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 GINM1Q9NU53 330 aa19.02■□□□□ 0.64
CLN3-201ENST00000333496 TLR2O60603 784 aa19.01■□□□□ 0.63
CLN3-201ENST00000333496 LRRFIP1Q32MZ4 808 aaKnown RBP19.01■□□□□ 0.63
CLN3-201ENST00000333496 CERKLQ49MI3 558 aaPredicted RBP19.01■□□□□ 0.63
CLN3-201ENST00000333496 C12orf60Q5U649 245 aa19.01■□□□□ 0.63
CLN3-201ENST00000333496 CTR9Q6PD62 1173 aa19.01■□□□□ 0.63
CLN3-201ENST00000333496 GADL1Q6ZQY3 521 aa19.01■□□□□ 0.63
CLN3-201ENST00000333496 FASTKD5Q7L8L6 764 aaKnown RBP19.01■□□□□ 0.63
CLN3-201ENST00000333496 CTU1Q7Z7A3 348 aaKnown RBP19.01■□□□□ 0.63
CLN3-201ENST00000333496 WDR18Q9BV38 432 aa19.01■□□□□ 0.63
CLN3-201ENST00000333496 GH2P01242 217 aa19■□□□□ 0.63
CLN3-201ENST00000333496 SLC44A5Q8NCS7 719 aa19■□□□□ 0.63
CLN3-201ENST00000333496 DYNLL2Q96FJ2 89 aa19■□□□□ 0.63
CLN3-201ENST00000333496 AS3MTQ9HBK9 375 aa19■□□□□ 0.63
CLN3-201ENST00000333496 ADGRA2Q96PE1 1338 aa19■□□□□ 0.63
CLN3-201ENST00000333496 SP3Q02447 781 aa19■□□□□ 0.63
CLN3-201ENST00000333496 SH3D19Q5HYK7 790 aa19■□□□□ 0.63
CLN3-201ENST00000333496 EPB41L4AQ9HCS5 686 aaPredicted RBP19■□□□□ 0.63
CLN3-201ENST00000333496 MGAMO43451 1857 aa18.99■□□□□ 0.63
CLN3-201ENST00000333496 NEFLP07196 543 aa18.99■□□□□ 0.63
CLN3-201ENST00000333496 GUCY1A2P33402 732 aa18.99■□□□□ 0.63
CLN3-201ENST00000333496 HMGCS2P54868 508 aa18.99■□□□□ 0.63
CLN3-201ENST00000333496 TREML2Q5T2D2 321 aa18.99■□□□□ 0.63
CLN3-201ENST00000333496 ABHD8Q96I13 439 aa18.99■□□□□ 0.63
CLN3-201ENST00000333496 CYP2C8P10632 490 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 PDE4AP27815 886 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 BACE1P56817 501 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 MTMR2Q13614 643 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 ABCB5Q2M3G0 1257 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 GIMAP6Q6P9H5 292 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 C17orf99Q6UX52 265 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 PROCA1Q8NCQ7 364 aaPredicted RBP18.98■□□□□ 0.63
CLN3-201ENST00000333496 CD99L2Q8TCZ2 262 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 AGTPBP1Q9UPW5 1226 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 SLC45A1Q9Y2W3 748 aa18.98■□□□□ 0.63
CLN3-201ENST00000333496 SBK1Q52WX2 424 aa18.97■□□□□ 0.63
CLN3-201ENST00000333496 DDRGK1Q96HY6 314 aa18.97■□□□□ 0.63
CLN3-201ENST00000333496 ARPP21Q9UBL0 812 aaPredicted RBP18.97■□□□□ 0.63
CLN3-201ENST00000333496 SWAP70Q9UH65 585 aa18.97■□□□□ 0.63
CLN3-201ENST00000333496 PATL2C9JE40 543 aaKnown RBP18.96■□□□□ 0.63
CLN3-201ENST00000333496 USP17L10C9JJH3 530 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 GNAT2P19087 354 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 CDK8P49336 464 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 RAB3GAP1Q15042 981 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 CCDC129Q6ZRS4 1044 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 C16orf86Q6ZW13 317 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 ERO1AQ96HE7 468 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 CPA4Q9UI42 421 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 TAOK2Q9UL54 1235 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 GREB1LQ9C091 1923 aaPredicted RBP18.96■□□□□ 0.63
CLN3-201ENST00000333496 TRIM6-TRIM34B2RNG4 842 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 FOXP2O15409 715 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 SEPT2Q15019 361 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 OTOP1Q7RTM1 612 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 AMOTL1Q8IY63 956 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 IFNL3Q8IZI9 196 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 PARK7Q99497 189 aaKnown RBP18.96■□□□□ 0.63
CLN3-201ENST00000333496 CABP5Q9NP86 173 aa18.96■□□□□ 0.63
CLN3-201ENST00000333496 C19orf81C9J6K1 198 aa18.95■□□□□ 0.62
CLN3-201ENST00000333496 RILPL2Q969X0 211 aa18.95■□□□□ 0.62
CLN3-201ENST00000333496 FAM227BQ96M60 508 aa18.95■□□□□ 0.62
CLN3-201ENST00000333496 DOCK3Q8IZD9 2030 aa18.95■□□□□ 0.62
CLN3-201ENST00000333496 A0A0D9SFI3 127 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 BCRP11274 1271 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 AKR1B1P15121 316 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 TICAM2Q86XR7 235 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 ACER1Q8TDN7 264 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 ARHGAP39Q9C0H5 1083 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 HELLSQ9NRZ9 838 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 EMILIN3Q9NT22 766 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 TRIM17Q9Y577 477 aa18.94■□□□□ 0.62
CLN3-201ENST00000333496 MINDY4BA8MYZ0 360 aa18.93■□□□□ 0.62
CLN3-201ENST00000333496 MPHOSPH10O00566 681 aaKnown RBP18.93■□□□□ 0.62
CLN3-201ENST00000333496 CAPN15O75808 1086 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms