RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 CKAP2LQ8IYA6 745 aa18.37■□□□□ 0.53
PDGFB-201ENST00000331163 RTKN2Q8IZC4 609 aa18.37■□□□□ 0.53
PDGFB-201ENST00000331163 NWD2Q9ULI1 1742 aa18.37■□□□□ 0.53
PDGFB-201ENST00000331163 CIAPIN1Q6FI81 312 aa18.36■□□□□ 0.53
PDGFB-201ENST00000331163 ERCC4Q92889 916 aaPredicted RBP18.36■□□□□ 0.53
PDGFB-201ENST00000331163 ATP8A2Q9NTI2 1148 aa18.36■□□□□ 0.53
PDGFB-201ENST00000331163 RNF181Q9P0P0 153 aa18.36■□□□□ 0.53
PDGFB-201ENST00000331163 CDKL5O76039 1030 aa18.36■□□□□ 0.53
PDGFB-201ENST00000331163 C17orf53Q8N3J3 647 aaPredicted RBP18.36■□□□□ 0.53
PDGFB-201ENST00000331163 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.36■□□□□ 0.53
PDGFB-201ENST00000331163 NRAPQ86VF7 1730 aa18.36■□□□□ 0.53
PDGFB-201ENST00000331163 PNMA1Q8ND90 353 aa18.36■□□□□ 0.53
PDGFB-201ENST00000331163 CABP5Q9NP86 173 aa18.36■□□□□ 0.53
PDGFB-201ENST00000331163 CDC27P30260 824 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 CDK8P49336 464 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 SDF4Q9BRK5 362 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 LMBRD1Q9NUN5 540 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 PLEKHA8P1O95397 391 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 XBP1P17861 261 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 CDC42EP5Q6NZY7 148 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 TMC4Q7Z404 712 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 ARPP21Q9UBL0 812 aaPredicted RBP18.35■□□□□ 0.53
PDGFB-201ENST00000331163 SERPINB13Q9UIV8 391 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 SIPA1L3O60292 1781 aaPredicted RBP18.35■□□□□ 0.53
PDGFB-201ENST00000331163 CBX1P83916 185 aa18.35■□□□□ 0.53
PDGFB-201ENST00000331163 DHX8Q14562 1220 aaKnown RBP18.35■□□□□ 0.53
PDGFB-201ENST00000331163 HMGN5P82970 282 aaKnown RBP18.34■□□□□ 0.53
PDGFB-201ENST00000331163 WDR78Q5VTH9 848 aa18.34■□□□□ 0.53
PDGFB-201ENST00000331163 KCTD1Q719H9 257 aa18.34■□□□□ 0.53
PDGFB-201ENST00000331163 FOXP2O15409 715 aa18.34■□□□□ 0.53
PDGFB-201ENST00000331163 SHROOM1Q2M3G4 852 aaPredicted RBP18.34■□□□□ 0.53
PDGFB-201ENST00000331163 NBPF9Q3BBW0 867 aa18.34■□□□□ 0.53
PDGFB-201ENST00000331163 MB21D2Q8IYB1 491 aaPredicted RBP18.34■□□□□ 0.53
PDGFB-201ENST00000331163 ENAHQ8N8S7 591 aaPredicted RBP18.34■□□□□ 0.53
PDGFB-201ENST00000331163 SHANK3Q9BYB0 1731 aa18.34■□□□□ 0.53
PDGFB-201ENST00000331163 CCDC196A0A1B0GTZ2 297 aa18.33■□□□□ 0.53
PDGFB-201ENST00000331163 CXCL9Q07325 125 aa18.33■□□□□ 0.53
PDGFB-201ENST00000331163 FANCBQ8NB91 859 aa18.33■□□□□ 0.53
PDGFB-201ENST00000331163 RASGRP4Q8TDF6 673 aa18.33■□□□□ 0.53
PDGFB-201ENST00000331163 STYK1Q6J9G0 422 aa18.33■□□□□ 0.52
PDGFB-201ENST00000331163 GPT2Q8TD30 523 aa18.33■□□□□ 0.52
PDGFB-201ENST00000331163 TMEM87BQ96K49 555 aa18.33■□□□□ 0.52
PDGFB-201ENST00000331163 TMEM39BQ9GZU3 492 aa18.33■□□□□ 0.52
PDGFB-201ENST00000331163 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.33■□□□□ 0.522e-9■■□□□ 14.1
PDGFB-201ENST00000331163 TMEM63CQ9P1W3 806 aa18.33■□□□□ 0.52
PDGFB-201ENST00000331163 DLK2Q6UY11 383 aa18.33■□□□□ 0.52
PDGFB-201ENST00000331163 SLC16A10Q8TF71 515 aa18.33■□□□□ 0.52
PDGFB-201ENST00000331163 NUP88Q99567 741 aaPredicted RBP18.33■□□□□ 0.52
PDGFB-201ENST00000331163 DDX4Q9NQI0 724 aaKnown RBP18.33■□□□□ 0.52
PDGFB-201ENST00000331163 SEC63Q9UGP8 760 aaKnown RBP18.33■□□□□ 0.52
PDGFB-201ENST00000331163 NOL7Q9UMY1 257 aaKnown RBP18.33■□□□□ 0.52
PDGFB-201ENST00000331163 ZKSCAN5Q9Y2L8 839 aa18.33■□□□□ 0.52
PDGFB-201ENST00000331163 IGSF3O75054 1194 aa18.32■□□□□ 0.52
PDGFB-201ENST00000331163 USH1GQ495M9 461 aa18.32■□□□□ 0.52
PDGFB-201ENST00000331163 SOGA3Q5TF21 947 aa18.32■□□□□ 0.52
PDGFB-201ENST00000331163 NSUN7Q8NE18 718 aaKnown RBP18.32■□□□□ 0.52
PDGFB-201ENST00000331163 ZNF512BQ96KM6 892 aaPredicted RBP18.32■□□□□ 0.52
PDGFB-201ENST00000331163 FLT1P17948 1338 aa18.32■□□□□ 0.52
PDGFB-201ENST00000331163 CERKLQ49MI3 558 aaPredicted RBP18.32■□□□□ 0.52
PDGFB-201ENST00000331163 SH2B2O14492 632 aaPredicted RBP18.32■□□□□ 0.52
PDGFB-201ENST00000331163 MKRN3Q13064 507 aaKnown RBP18.32■□□□□ 0.52
PDGFB-201ENST00000331163 MTMR6Q9Y217 621 aa18.32■□□□□ 0.52
PDGFB-201ENST00000331163 ZDHHC9Q9Y397 364 aa18.32■□□□□ 0.52
PDGFB-201ENST00000331163 H7C1D1 291 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 GUCY1A2P33402 732 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 CPXCR1Q8N123 301 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 AKR1B1P15121 316 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 INTS4Q96HW7 963 aaKnown RBP18.31■□□□□ 0.52
PDGFB-201ENST00000331163 NBPF3Q9H094 633 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 BTBD18B2RXH4 712 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 CCDC73Q6ZRK6 1079 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 MICALL2Q8IY33 904 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 CEP95Q96GE4 821 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 ZFP91Q96JP5 570 aaPredicted RBP18.31■□□□□ 0.52
PDGFB-201ENST00000331163 BRMS1Q9HCU9 246 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 HOMER2Q9NSB8 354 aa18.31■□□□□ 0.52
PDGFB-201ENST00000331163 KIAA2012Q0VF49 1180 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 ZNRF3Q9ULT6 936 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 BIN1O00499 593 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 PFKFB2O60825 505 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 GH2P01242 217 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 NR5A1Q13285 461 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 KRT40Q6A162 431 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 STAG2Q8N3U4 1231 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 PLIN2Q99541 437 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 RTFDC1Q9BY42 306 aaPredicted RBP18.3■□□□□ 0.52
PDGFB-201ENST00000331163 CCDC39Q9UFE4 941 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 C4BP0C0L5 1744 aa18.3■□□□□ 0.52
PDGFB-201ENST00000331163 YDJCA8MPS7 323 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 GIMAP6Q6P9H5 292 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 PGBD1Q96JS3 809 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 LY9Q9HBG7 655 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 RTL9Q8NET4 1388 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 KIF5BP33176 963 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 GMPSP49915 693 aaPredicted RBP18.29■□□□□ 0.52
PDGFB-201ENST00000331163 SEPT2Q15019 361 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 STRIP1Q5VSL9 837 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 CC2D2BQ6DHV5 1058 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 CDAN1Q8IWY9 1227 aa18.29■□□□□ 0.52
PDGFB-201ENST00000331163 DDTLA6NHG4 134 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms